Cow genome map
| Conread name: | unkn-IIU602653792.R1 |
| Conread position: | 1-252 |
| Cow position: | chr6:15278822-15279084 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-254 |
| Cow position: | chr6:3888515-3888759 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 161, 93 |
| Conread position: | 1-254 |
| Cow position: | chr6:34891135-34891399 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-254 |
| Cow position: | chr6:58065729-58065459 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 94, 205 |
| Conread position: | 1-270 |
| Cow position: | chr6:538973-538700 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 99, 33 |
| Conread position: | 1-270 |
| Cow position: | chr6:51086932-51086652 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-271 |
| Cow position: | chr6:21973643-21973365 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 96, 160 |
| Conread position: | 1-281 |
| Cow position: | chr6:10644729-10644446 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 93 |
| Conread position: | 1-361 |
| Cow position: | chr6:6474878-6475230 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 37 |
| Conread position: | 1-364 |
| Cow position: | chr6:20560113-20560472 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 96, 204 |
| Conread position: | 1-364 |
| Cow position: | chr6:65882200-65881847 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 124 |
| Conread position: | 1-368 |
| Cow position: | chr6:914618-914265 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 79 |
| Conread position: | 1-368 |
| Cow position: | chr6:1821636-1821996 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 138 |
| Conread position: | 1-368 |
| Cow position: | chr6:5948788-5949143 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 207 |
| Conread position: | 1-368 |
| Cow position: | chr6:8203172-8202813 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 207 |
| Conread position: | 1-368 |
| Cow position: | chr6:8760301-8760668 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 279 |
| Conread position: | 1-368 |
| Cow position: | chr6:11724130-11724476 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 161, 59 |
| Conread position: | 1-368 |
| Cow position: | chr6:15140188-15140551 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 211 |
| Conread position: | 1-368 |
| Cow position: | chr6:24240042-24239688 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 89 |
| Conread position: | 1-368 |
| Cow position: | chr6:25215208-25214854 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 146 |
| Conread position: | 1-368 |
| Cow position: | chr6:27529012-27529374 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 210 |
| Conread position: | 1-368 |
| Cow position: | chr6:39438754-39438397 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 201 |
| Conread position: | 1-368 |
| Cow position: | chr6:40866335-40866687 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 79 |
| Conread position: | 1-368 |
| Cow position: | chr6:47042212-47042567 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 207 |
| Conread position: | 2-368 |
| Cow position: | chr6:3487433-3487791 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 208 |
| Conread position: | 4-268 |
| Cow position: | chr6:27170562-27170286 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 70, 157 |
| Conread position: | 4-364 |
| Cow position: | chr6:185482-185834 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 156 |
| Conread position: | 4-364 |
| Cow position: | chr6:65820987-65821339 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 156 |
| Conread position: | 4-368 |
| Cow position: | chr6:184798-185152 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 4-368 |
| Cow position: | chr6:17047038-17046691 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 93, 155 |
| Conread position: | 4-368 |
| Cow position: | chr6:28490578-28490934 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 69, 86 |
| Conread position: | 4-368 |
| Cow position: | chr6:30273910-30274261 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 93, 36 |
| Conread position: | 7-248 |
| Cow position: | chr6:1404603-1404861 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 72, 159 |
| Conread position: | 7-254 |
| Cow position: | chr6:40316372-40316106 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 7-263 |
| Cow position: | chr6:30480083-30479819 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 92, 27 |
| Conread position: | 7-292 |
| Cow position: | chr6:51715520-51715225 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 90, 157 |
| Conread position: | 7-346 |
| Cow position: | chr6:39333886-39334217 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 201 |
| Conread position: | 7-363 |
| Cow position: | chr6:28169887-28169539 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 201 |
| Conread position: | 7-364 |
| Cow position: | chr6:1410669-1411023 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 72, 159 |
| Conread position: | 7-364 |
| Cow position: | chr6:13105041-13104692 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 153 |
| Conread position: | 7-364 |
| Cow position: | chr6:13944890-13944542 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 132 |
| Conread position: | 7-364 |
| Cow position: | chr6:40252642-40252296 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 56 |
| Conread position: | 7-364 |
| Cow position: | chr6:43618699-43618350 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 153 |
| Conread position: | 7-364 |
| Cow position: | chr6:68027910-68027556 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 67, 158 |
| Conread position: | 7-367 |
| Cow position: | chr6:40276070-40275720 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 88, 59 |
| Conread position: | 7-368 |
| Cow position: | chr6:330480-330835 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 156 |
| Conread position: | 7-368 |
| Cow position: | chr6:2375681-2375329 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 250 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 88, 59 |
| Conread position: | 7-368 |
| Cow position: | chr6:6567573-6567219 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 201 |
| Conread position: | 7-368 |
| Cow position: | chr6:12665336-12665688 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 205 |
| Conread position: | 7-368 |
| Cow position: | chr6:16052864-16052511 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 154 |
| Conread position: | 7-368 |
| Cow position: | chr6:26669879-26670235 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 59, 208 |
| Conread position: | 7-368 |
| Cow position: | chr6:43792734-43793078 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 88, 144 |
| Conread position: | 7-368 |
| Cow position: | chr6:44000044-43999692 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 204 |
| Conread position: | 7-368 |
| Cow position: | chr6:44032775-44032423 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 88, 205 |
| Conread position: | 7-368 |
| Cow position: | chr6:58601463-58601112 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 217 |
| Conread position: | 9-270 |
| Cow position: | chr6:28133911-28133644 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 86, 251 |
| Conread position: | 10-357 |
| Cow position: | chr6:13316493-13316830 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 199 |
| Conread position: | 16-369 |
| Cow position: | chr6:51731071-51730727 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 142 |
| Conread position: | 18-334 |
| Cow position: | chr6:52693988-52693680 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 79, 189 |
| Conread position: | 29-270 |
| Cow position: | chr6:66232776-66232523 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 29-368 |
| Cow position: | chr6:13847988-13847657 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 69, 131 |
| Conread position: | 44-363 |
| Cow position: | chr6:56042773-56043083 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 59, 189 |
| Conread position: | 46-254 |
| Cow position: | chr6:40553632-40553848 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 51, 101 |
| Conread position: | 50-368 |
| Cow position: | chr6:27471539-27471233 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 47, 97 |
| Conread position: | 101-270 |
| Cow position: | chr6:38900285-38900464 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 101-333 |
| Cow position: | chr6:14389466-14389242 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 49, 58 |
| Conread position: | 110-369 |
| Cow position: | chr6:28275858-28275613 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 52, 93 |
| Conread position: | 130-346 |
| Cow position: | chr6:36527124-36526914 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 32, 6 |
Show alignments to all cow chromosomes.