Cow genome map

Conread name: unkn-IIU602653792.R1

Conread position: 1-253
Cow position: chrX:23455192-23455455 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 197
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 96, 0

Conread position: 1-254
Cow position: chrX:9093383-9093119 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 186
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 96, 0

Conread position: 1-254
Cow position: chrX:30231272-30231535 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 187
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 96, 0

Conread position: 1-270
Cow position: chrX:13416610-13416885 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 189
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 102, 43

Conread position: 1-348
Cow position: chrX:5394185-5394524 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 247
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 96, 159

Conread position: 1-357
Cow position: chrX:23277851-23277505 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 207

Conread position: 1-364
Cow position: chrX:2481805-2482160 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 258
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 71, 59

Conread position: 1-366
Cow position: chrX:44388594-44388235 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 177

Conread position: 1-368
Cow position: chrX:1547798-1547446 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 160

Conread position: 1-368
Cow position: chrX:4797149-4796785 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 261
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 94, 160

Conread position: 1-368
Cow position: chrX:5296724-5297082 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 207

Conread position: 1-368
Cow position: chrX:6241782-6242127 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 254
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 225, 79

Conread position: 1-368
Cow position: chrX:12354065-12353706 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 9

Conread position: 1-368
Cow position: chrX:15126411-15126770 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 219

Conread position: 1-368
Cow position: chrX:15599790-15599431 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 207

Conread position: 1-368
Cow position: chrX:16700127-16699773 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 258
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 96, 177

Conread position: 1-368
Cow position: chrX:18952856-18953215 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 207

Conread position: 1-368
Cow position: chrX:21580290-21579934 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 146

Conread position: 1-368
Cow position: chrX:21830353-21829997 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 256
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 96, 146

Conread position: 1-368
Cow position: chrX:22618473-22618833 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 251
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 78, 216

Conread position: 1-368
Cow position: chrX:23389692-23390051 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 207

Conread position: 1-368
Cow position: chrX:29852740-29853099 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 207

Conread position: 1-368
Cow position: chrX:38148415-38148060 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 160

Conread position: 4-266
Cow position: chrX:13053829-13053555 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 200
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 67, 0

Conread position: 4-342
Cow position: chrX:27316097-27315767 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 175

Conread position: 4-364
Cow position: chrX:21059603-21059255 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 82

Conread position: 4-368
Cow position: chrX:1834641-1834284 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 157

Conread position: 4-368
Cow position: chrX:13412310-13412666 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 204

Conread position: 4-368
Cow position: chrX:16276468-16276115 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 155

Conread position: 4-368
Cow position: chrX:23040301-23040656 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 138

Conread position: 4-368
Cow position: chrX:26528797-26528444 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 157

Conread position: 4-368
Cow position: chrX:26757793-26758145 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 256
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 93, 143

Conread position: 5-254
Cow position: chrX:29286251-29285991 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 197
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 91, 229

Conread position: 5-368
Cow position: chrX:16362303-16362658 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 156

Conread position: 7-254
Cow position: chrX:979414-979156 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 192
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 88, 153

Conread position: 7-254
Cow position: chrX:12183735-12183477 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 135, 0

Conread position: 7-268
Cow position: chrX:12653707-12653979 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 199
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 88, 153

Conread position: 7-270
Cow position: chrX:28585798-28585524 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 195
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 88, 153

Conread position: 7-333
Cow position: chrX:12343754-12343442 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 235
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 88, 153

Conread position: 7-361
Cow position: chrX:29097014-29096679 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 241
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 90, 250

Conread position: 7-362
Cow position: chrX:5335667-5336014 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 244
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 88, 205

Conread position: 7-364
Cow position: chrX:983481-983132 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 261
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 88, 259

Conread position: 7-364
Cow position: chrX:3084307-3084655 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 205

Conread position: 7-364
Cow position: chrX:3420390-3420736 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 242
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 71, 82

Conread position: 7-364
Cow position: chrX:11148516-11148866 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 154

Conread position: 7-364
Cow position: chrX:11422689-11422341 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 59

Conread position: 7-364
Cow position: chrX:17477606-17477955 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 205

Conread position: 7-364
Cow position: chrX:22816668-22816319 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 68

Conread position: 7-364
Cow position: chrX:28650734-28651077 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 139

Conread position: 7-364
Cow position: chrX:29172944-29173293 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 153

Conread position: 7-364
Cow position: chrX:30171013-30171364 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 245
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 70, 206

Conread position: 7-364
Cow position: chrX:35530682-35530332 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 153

Conread position: 7-365
Cow position: chrX:12314937-12315286 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 201

Conread position: 7-366
Cow position: chrX:5322908-5323255 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 252
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 91, 37

Conread position: 7-368
Cow position: chrX:321284-320936 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 257
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 95, 140

Conread position: 7-368
Cow position: chrX:6872254-6872607 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 153

Conread position: 7-368
Cow position: chrX:8962757-8963110 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 153

Conread position: 7-368
Cow position: chrX:9009153-9008801 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 59

Conread position: 7-368
Cow position: chrX:12702885-12703238 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 153

Conread position: 7-368
Cow position: chrX:13075878-13076231 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 154

Conread position: 7-368
Cow position: chrX:13096453-13096805 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 153

Conread position: 7-368
Cow position: chrX:15980140-15980493 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 249
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 143, 96

Conread position: 7-368
Cow position: chrX:16811624-16811977 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 153

Conread position: 7-368
Cow position: chrX:20315243-20315596 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 151

Conread position: 7-368
Cow position: chrX:21589786-21589434 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 197

Conread position: 7-368
Cow position: chrX:22488964-22488613 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 213

Conread position: 7-368
Cow position: chrX:22524785-22525138 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 213

Conread position: 7-368
Cow position: chrX:23020148-23019795 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 200

Conread position: 7-368
Cow position: chrX:24324755-24325115 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 250
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 67, 157

Conread position: 7-368
Cow position: chrX:26399361-26399715 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 153

Conread position: 7-368
Cow position: chrX:27425507-27425854 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 243
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 88, 155

Conread position: 7-368
Cow position: chrX:29910606-29910959 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 153

Conread position: 7-368
Cow position: chrX:32066346-32066699 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 212

Conread position: 7-368
Cow position: chrX:37812981-37812628 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 153

Conread position: 8-368
Cow position: chrX:27987007-27987359 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 244
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 66, 189

Conread position: 9-276
Cow position: chrX:4752802-4753083 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 94, 35

Conread position: 11-368
Cow position: chrX:24134437-24134790 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 242
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 92, 202

Conread position: 13-368
Cow position: chrX:41850386-41850729 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 124

Conread position: 14-270
Cow position: chrX:34346041-34345783 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 175
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 149, 44

Conread position: 15-363
Cow position: chrX:30365971-30366302 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 241
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 88, 127

Conread position: 15-364
Cow position: chrX:31494230-31493888 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 146

Conread position: 16-364
Cow position: chrX:2604857-2604517 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 244
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 79, 144

Conread position: 16-364
Cow position: chrX:5864204-5863864 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 144

Conread position: 16-364
Cow position: chrX:7482443-7482102 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 245
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 58, 145

Conread position: 16-364
Cow position: chrX:7752710-7752369 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 254
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 134, 13

Conread position: 23-368
Cow position: chrX:971578-971241 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 185

Conread position: 28-368
Cow position: chrX:28757698-28758029 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 38

Conread position: 28-368
Cow position: chrX:31186424-31186758 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 242
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 46, 134

Conread position: 34-364
Cow position: chrX:12479499-12479177 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 63, 174

Conread position: 37-368
Cow position: chrX:18658999-18659322 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 231
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 58, 123

Conread position: 44-270
Cow position: chrX:16041422-16041645 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 52, 102

Conread position: 49-346
Cow position: chrX:31199227-31198938 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 215
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 48, 11

Conread position: 66-364
Cow position: chrX:5283017-5283307 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 210
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 29, 94

Conread position: 66-364
Cow position: chrX:11464244-11464532 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 212
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 84, 93

Conread position: 67-364
Cow position: chrX:30183161-30183448 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 203
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 30, 66

Conread position: 86-368
Cow position: chrX:30712327-30712055 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 209
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 11, 61

Conread position: 95-368
Cow position: chrX:12654032-12654296 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 202
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 55, 64

Conread position: 130-368
Cow position: chrX:31372508-31372283 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 185
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 35, 132

Conread position: 164-368
Cow position: chrX:20359391-20359585 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 46, 0

Show alignments to all cow chromosomes.