Cow genome map

Conread name: unkn-MI-P-A1-acn-a-04-1-UM.s1

Conread position: 1-168
Cow position: chr1:95733666-95733830 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 1-413
Cow position: chr1:71555177-71555588 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 175

Conread position: 1-417
Cow position: chr1:11878564-11878959 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 22

Conread position: 1-440
Cow position: chr1:3750518-3750096 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 159

Conread position: 2-278
Cow position: chr1:45979261-45979004 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 195
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 111, 32

Conread position: 5-417
Cow position: chr1:49728501-49728083 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 142

Conread position: 5-453
Cow position: chr1:85852-85407 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 60

Conread position: 6-227
Cow position: chr1:54217234-54217455 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 105, 18

Conread position: 6-235
Cow position: chr1:80329341-80329564 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 107, 34

Conread position: 7-229
Cow position: chr1:2297192-2296973 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 155
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 102, 82

Conread position: 8-277
Cow position: chr1:62041983-62041732 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 195
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 106, 38

Conread position: 11-346
Cow position: chr1:47371556-47371228 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 228
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 25, 129

Conread position: 12-423
Cow position: chr1:25885494-25885894 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 21

Conread position: 13-268
Cow position: chr1:39251602-39251335 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 194
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 27, 0

Conread position: 13-277
Cow position: chr1:77755101-77755372 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 197
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 98, 158

Conread position: 13-453
Cow position: chr1:76779843-76780259 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 73

Conread position: 20-309
Cow position: chr1:82387529-82387240 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 202
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 221, 74

Conread position: 24-162
Cow position: chr1:53568235-53568093 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 24-257
Cow position: chr1:79349036-79349264 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 64, 134

Conread position: 24-414
Cow position: chr1:37465437-37465798 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 279
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 218, 89

Conread position: 25-453
Cow position: chr1:31232755-31233163 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 32

Conread position: 34-416
Cow position: chr1:61242308-61241928 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 138

Conread position: 35-346
Cow position: chr1:101884197-101883883 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 234
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 78, 22

Conread position: 35-356
Cow position: chr1:28407931-28408258 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 238
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 206, 67

Conread position: 39-164
Cow position: chr1:34311457-34311330 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 62, 94

Conread position: 39-170
Cow position: chr1:2203771-2203906 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 39-230
Cow position: chr1:3746685-3746498 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 155
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 74, 134

Conread position: 39-278
Cow position: chr1:52207572-52207340 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 74, 131

Conread position: 39-278
Cow position: chr1:69290724-69290495 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 74, 83

Conread position: 39-297
Cow position: chr1:101966773-101967028 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 74, 135

Conread position: 39-353
Cow position: chr1:88017247-88017568 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 110

Conread position: 39-356
Cow position: chr1:65155191-65155520 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 137

Conread position: 39-361
Cow position: chr1:81370893-81371211 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 235
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 72, 18

Conread position: 39-397
Cow position: chr1:2599135-2599499 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 255
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 75, 141

Conread position: 39-413
Cow position: chr1:18223292-18223651 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 132

Conread position: 39-413
Cow position: chr1:37432966-37432588 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 106

Conread position: 39-413
Cow position: chr1:64098696-64099059 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 137

Conread position: 39-418
Cow position: chr1:85409282-85409660 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 137

Conread position: 39-422
Cow position: chr1:6985265-6985640 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 275
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 200, 71

Conread position: 39-429
Cow position: chr1:34893159-34892773 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 185

Conread position: 39-438
Cow position: chr1:82572660-82573059 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 12

Conread position: 39-442
Cow position: chr1:22496131-22495741 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 25

Conread position: 40-198
Cow position: chr1:78885277-78885437 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 73, 134

Conread position: 40-235
Cow position: chr1:59911164-59910969 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 156
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 69, 13

Conread position: 40-241
Cow position: chr1:31951941-31951744 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 163
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 71, 155

Conread position: 40-241
Cow position: chr1:100387875-100388073 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 71, 122

Conread position: 40-278
Cow position: chr1:64745168-64745401 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 177
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 25, 132

Conread position: 40-290
Cow position: chr1:63134497-63134259 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 183
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 71, 133

Conread position: 40-320
Cow position: chr1:23510211-23510475 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 207
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 73, 130

Conread position: 40-399
Cow position: chr1:56233459-56233103 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 260
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 129, 73

Conread position: 40-425
Cow position: chr1:28512073-28512448 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 277
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 73, 32

Conread position: 40-427
Cow position: chr1:67300047-67299674 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 265
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 79, 109

Conread position: 41-182
Cow position: chr1:72117210-72117342 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 41-207
Cow position: chr1:71272602-71272444 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 134
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 62, 105

Conread position: 41-262
Cow position: chr1:6865828-6866048 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 67, 135

Conread position: 41-413
Cow position: chr1:14559971-14560324 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 273
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 70, 111

Conread position: 46-273
Cow position: chr1:46268465-46268679 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 192, 48

Conread position: 46-281
Cow position: chr1:54365038-54365272 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 151
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 67, 130

Conread position: 46-304
Cow position: chr1:11831887-11831637 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 197
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 67, 73

Conread position: 48-434
Cow position: chr1:33310053-33310429 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 257
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 59, 16

Conread position: 51-422
Cow position: chr1:64479392-64479752 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 253
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 59, 113

Conread position: 52-432
Cow position: chr1:57077593-57077195 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 284
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 62, 212

Conread position: 53-418
Cow position: chr1:41092599-41092974 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 62

Conread position: 57-273
Cow position: chr1:37739228-37739436 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 56, 117

Conread position: 58-233
Cow position: chr1:20135858-20135688 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 119

Conread position: 59-278
Cow position: chr1:57757747-57757542 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 74

Conread position: 60-236
Cow position: chr1:68332634-68332809 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 142
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 53, 118

Conread position: 60-451
Cow position: chr1:39243988-39244385 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 115

Conread position: 64-281
Cow position: chr1:8726148-8726371 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 47, 112

Conread position: 64-281
Cow position: chr1:22072203-22071993 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 49, 111

Conread position: 77-342
Cow position: chr1:81293028-81292754 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 208
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 34, 104

Conread position: 81-452
Cow position: chr1:74713997-74713642 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 87

Conread position: 97-336
Cow position: chr1:100132402-100132167 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 109, 7

Conread position: 104-271
Cow position: chr1:92550599-92550762 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 139, 24

Conread position: 124-429
Cow position: chr1:56858728-56858417 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 221
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 15, 111

Conread position: 125-340
Cow position: chr1:40164726-40164515 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 114, 20

Conread position: 134-453
Cow position: chr1:87914470-87914779 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 38

Conread position: 135-402
Cow position: chr1:69203791-69204061 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 197
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 108, 39

Conread position: 135-417
Cow position: chr1:3020287-3020576 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 207
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 70, 174

Conread position: 144-330
Cow position: chr1:19439320-19439511 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 97, 30

Conread position: 146-278
Cow position: chr1:30518596-30518469 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 95, 28

Conread position: 149-404
Cow position: chr1:90370476-90370726 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 196
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 87, 25

Conread position: 155-413
Cow position: chr1:102557048-102556807 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 192
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 86, 19

Conread position: 172-416
Cow position: chr1:34311291-34311038 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 20, 81

Conread position: 180-426
Cow position: chr1:31274163-31274409 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 42, 37

Conread position: 186-428
Cow position: chr1:81924675-81924924 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 178
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 55, 10

Conread position: 187-345
Cow position: chr1:55681878-55682045 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 187-408
Cow position: chr1:79915659-79915430 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 171
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 15, 186

Conread position: 187-428
Cow position: chr1:72998721-72998472 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 179
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 13, 123

Conread position: 187-453
Cow position: chr1:24222790-24222514 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 187
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 58, 9

Conread position: 189-437
Cow position: chr1:88647833-88648079 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 174
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 52, 7

Conread position: 190-422
Cow position: chr1:23887394-23887163 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 177
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 53, 6

Conread position: 190-424
Cow position: chr1:15366818-15367063 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 166

Conread position: 192-413
Cow position: chr1:30042167-30041944 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 8, 163

Conread position: 192-431
Cow position: chr1:58881875-58882115 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 51, 164

Conread position: 196-407
Cow position: chr1:76223582-76223800 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 157
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 47, 164

Conread position: 196-416
Cow position: chr1:1743161-1743391 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 162
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 47, 162

Conread position: 198-418
Cow position: chr1:99858353-99858131 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 45, 169

Conread position: 205-428
Cow position: chr1:86708897-86709124 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 164
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 38, 152

Conread position: 271-415
Cow position: chr1:80329691-80329833 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 92

Conread position: 293-452
Cow position: chr1:11831604-11831458 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 297-453
Cow position: chr1:63133958-63133810 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 0

Show alignments to all cow chromosomes.