Cow genome map
| Conread name: | unkn-MI-P-A1-acn-a-04-1-UM.s1 |
| Conread position: | 2-236 |
| Cow position: | chr11:30660899-30660663 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 111, 174 |
| Conread position: | 5-422 |
| Cow position: | chr11:8087559-8087967 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 29 |
| Conread position: | 8-225 |
| Cow position: | chr11:3261309-3261102 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 105, 151 |
| Conread position: | 9-415 |
| Cow position: | chr11:55120067-55119662 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 37 |
| Conread position: | 10-293 |
| Cow position: | chr11:15374376-15374114 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 100, 25 |
| Conread position: | 11-170 |
| Cow position: | chr11:80780719-80780559 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 102, 23 |
| Conread position: | 15-333 |
| Cow position: | chr11:64101645-64101322 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 98, 60 |
| Conread position: | 17-180 |
| Cow position: | chr11:38009426-38009593 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 21-419 |
| Cow position: | chr11:39830649-39831033 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 291 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 92, 57 |
| Conread position: | 35-278 |
| Cow position: | chr11:55282941-55283195 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 35-336 |
| Cow position: | chr11:25972371-25972666 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 30, 136 |
| Conread position: | 35-426 |
| Cow position: | chr11:24008668-24008281 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 49 |
| Conread position: | 36-453 |
| Cow position: | chr11:69491983-69491582 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 304 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 73, 27 |
| Conread position: | 38-453 |
| Cow position: | chr11:43831244-43831642 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 303 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 146, 49 |
| Conread position: | 39-168 |
| Cow position: | chr11:53331353-53331219 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 39-187 |
| Cow position: | chr11:9424556-9424408 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 74, 134 |
| Conread position: | 39-187 |
| Cow position: | chr11:34025102-34024960 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 74, 55 |
| Conread position: | 39-220 |
| Cow position: | chr11:16363822-16364006 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 71, 95 |
| Conread position: | 39-265 |
| Cow position: | chr11:21909563-21909788 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 137 |
| Conread position: | 39-274 |
| Cow position: | chr11:43855662-43855892 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 74, 55 |
| Conread position: | 39-278 |
| Cow position: | chr11:19567599-19567374 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 39-340 |
| Cow position: | chr11:12065261-12064971 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 202, 31 |
| Conread position: | 39-372 |
| Cow position: | chr11:74171048-74171377 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 255 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 74, 26 |
| Conread position: | 39-411 |
| Cow position: | chr11:34398050-34397673 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 136 |
| Conread position: | 39-413 |
| Cow position: | chr11:34761159-34761525 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 268 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 43, 154 |
| Conread position: | 39-413 |
| Cow position: | chr11:82529447-82529063 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 39-418 |
| Cow position: | chr11:25807166-25807553 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 137 |
| Conread position: | 39-426 |
| Cow position: | chr11:17737886-17737497 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 266 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 72, 85 |
| Conread position: | 39-452 |
| Cow position: | chr11:27816949-27817338 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 67 |
| Conread position: | 39-453 |
| Cow position: | chr11:57752808-57753227 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 105 |
| Conread position: | 40-418 |
| Cow position: | chr11:5220867-5221240 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 38 |
| Conread position: | 40-429 |
| Cow position: | chr11:81336717-81337098 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 232, 32 |
| Conread position: | 41-194 |
| Cow position: | chr11:462838-462681 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 135 |
| Conread position: | 41-278 |
| Cow position: | chr11:44064454-44064215 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 130 |
| Conread position: | 41-418 |
| Cow position: | chr11:18452585-18452953 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 122 |
| Conread position: | 41-418 |
| Cow position: | chr11:77772132-77772499 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 277 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 42-265 |
| Cow position: | chr11:54204261-54204476 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 43-452 |
| Cow position: | chr11:77762955-77763340 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 46-326 |
| Cow position: | chr11:27610994-27610718 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 10, 135 |
| Conread position: | 46-361 |
| Cow position: | chr11:15885861-15885538 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 140 |
| Conread position: | 52-217 |
| Cow position: | chr11:39166741-39166575 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 61, 126 |
| Conread position: | 52-254 |
| Cow position: | chr11:34265983-34265786 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 118 |
| Conread position: | 52-413 |
| Cow position: | chr11:34304023-34303653 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 118 |
| Conread position: | 52-426 |
| Cow position: | chr11:58793449-58793817 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 53-278 |
| Cow position: | chr11:1774329-1774555 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 58, 119 |
| Conread position: | 57-180 |
| Cow position: | chr11:77477723-77477847 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 57-180 |
| Cow position: | chr11:77478397-77478521 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 57-453 |
| Cow position: | chr11:22851594-22851199 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 96 |
| Conread position: | 58-321 |
| Cow position: | chr11:70605928-70605660 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 53, 19 |
| Conread position: | 60-453 |
| Cow position: | chr11:10877802-10877412 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 116 |
| Conread position: | 61-381 |
| Cow position: | chr11:11109554-11109878 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 42 |
| Conread position: | 64-453 |
| Cow position: | chr11:40574226-40574611 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 114 |
| Conread position: | 67-418 |
| Cow position: | chr11:57153117-57153474 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 104 |
| Conread position: | 74-453 |
| Cow position: | chr11:18153712-18154087 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 106 |
| Conread position: | 78-277 |
| Cow position: | chr11:35284627-35284437 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 29, 87 |
| Conread position: | 85-452 |
| Cow position: | chr11:77756232-77756596 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 51 |
| Conread position: | 89-453 |
| Cow position: | chr11:35251475-35251831 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 15 |
| Conread position: | 94-418 |
| Cow position: | chr11:57062377-57062061 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 82 |
| Conread position: | 97-278 |
| Cow position: | chr11:60511566-60511745 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 144, 80 |
| Conread position: | 107-224 |
| Cow position: | chr11:9295132-9295245 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 122-355 |
| Cow position: | chr11:12141218-12140993 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 119, 10 |
| Conread position: | 124-418 |
| Cow position: | chr11:25856672-25856394 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 118, 39 |
| Conread position: | 132-361 |
| Cow position: | chr11:84729412-84729180 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 111, 42 |
| Conread position: | 136-368 |
| Cow position: | chr11:64502046-64501802 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 191 |
| Conread position: | 137-418 |
| Cow position: | chr11:52859924-52859654 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 87, 35 |
| Conread position: | 176-430 |
| Cow position: | chr11:54666244-54666500 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 66, 124 |
| Conread position: | 180-413 |
| Cow position: | chr11:77819842-77820081 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 13, 61 |
| Conread position: | 187-437 |
| Cow position: | chr11:40050024-40050278 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 190-428 |
| Cow position: | chr11:80003153-80002900 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 51, 184 |
| Conread position: | 192-417 |
| Cow position: | chr11:77193612-77193842 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 158 |
| Conread position: | 220-418 |
| Cow position: | chr11:51177870-51177668 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 149 |
| Conread position: | 240-453 |
| Cow position: | chr11:34024943-34024723 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 123 |
| Conread position: | 294-453 |
| Cow position: | chr11:60822421-60822573 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
Show alignments to all cow chromosomes.