Cow genome map
| Conread name: | unkn-MI-P-A1-acn-a-04-1-UM.s1 |
| Conread position: | 1-277 |
| Cow position: | chr12:11187815-11187548 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 2-246 |
| Cow position: | chr12:42854346-42854112 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 231, 31 |
| Conread position: | 16-231 |
| Cow position: | chr12:15147622-15147399 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 94, 209 |
| Conread position: | 23-452 |
| Cow position: | chr12:2837697-2838109 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 152 |
| Conread position: | 24-172 |
| Cow position: | chr12:39710187-39710035 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 24-278 |
| Cow position: | chr12:33350896-33350651 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 84, 106 |
| Conread position: | 24-290 |
| Cow position: | chr12:34476158-34475902 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 88, 149 |
| Conread position: | 35-378 |
| Cow position: | chr12:12709640-12709964 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 249 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 78, 106 |
| Conread position: | 35-413 |
| Cow position: | chr12:16962151-16961771 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 197 |
| Conread position: | 35-417 |
| Cow position: | chr12:33278452-33278080 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 153, 52 |
| Conread position: | 36-281 |
| Cow position: | chr12:23499367-23499124 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 81, 60 |
| Conread position: | 39-206 |
| Cow position: | chr12:20791997-20792166 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 68, 31 |
| Conread position: | 39-230 |
| Cow position: | chr12:27111419-27111234 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 67 |
| Conread position: | 39-239 |
| Cow position: | chr12:18337462-18337263 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 39-241 |
| Cow position: | chr12:32426154-32425944 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 39-271 |
| Cow position: | chr12:19808749-19808984 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 72, 90 |
| Conread position: | 39-324 |
| Cow position: | chr12:5896520-5896818 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 74, 184 |
| Conread position: | 39-324 |
| Cow position: | chr12:38222992-38223295 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 39-352 |
| Cow position: | chr12:11306091-11306414 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 11 |
| Conread position: | 39-355 |
| Cow position: | chr12:20226833-20227156 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 49 |
| Conread position: | 39-396 |
| Cow position: | chr12:28214640-28214288 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 72, 137 |
| Conread position: | 39-406 |
| Cow position: | chr12:8767080-8767451 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 83, 54 |
| Conread position: | 39-413 |
| Cow position: | chr12:33277070-33277437 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 67, 137 |
| Conread position: | 39-424 |
| Cow position: | chr12:7936535-7936923 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 75, 17 |
| Conread position: | 40-413 |
| Cow position: | chr12:26310558-26310921 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 24, 73 |
| Conread position: | 40-418 |
| Cow position: | chr12:10161401-10161789 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 47 |
| Conread position: | 41-242 |
| Cow position: | chr12:29801737-29801535 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 73, 121 |
| Conread position: | 41-283 |
| Cow position: | chr12:29758941-29759184 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 70, 135 |
| Conread position: | 41-418 |
| Cow position: | chr12:21066754-21066367 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 72, 32 |
| Conread position: | 41-453 |
| Cow position: | chr12:8467647-8468042 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 135 |
| Conread position: | 42-226 |
| Cow position: | chr12:25514644-25514457 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 67, 136 |
| Conread position: | 59-325 |
| Cow position: | chr12:7086628-7086360 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 52, 107 |
| Conread position: | 66-450 |
| Cow position: | chr12:36974908-36975285 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 47, 85 |
| Conread position: | 68-409 |
| Cow position: | chr12:27423775-27423427 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 108 |
| Conread position: | 76-413 |
| Cow position: | chr12:7024934-7025282 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 253 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 35, 10 |
| Conread position: | 77-415 |
| Cow position: | chr12:1993060-1993409 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 30, 62 |
| Conread position: | 86-256 |
| Cow position: | chr12:25419520-25419688 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 85, 111 |
| Conread position: | 97-425 |
| Cow position: | chr12:4517997-4518326 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 52, 7 |
| Conread position: | 114-278 |
| Cow position: | chr12:13747509-13747674 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 61, 30 |
| Conread position: | 149-327 |
| Cow position: | chr12:22474312-22474135 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 91 |
| Conread position: | 205-425 |
| Cow position: | chr12:36049491-36049269 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 96 |
Show alignments to all cow chromosomes.