Cow genome map
| Conread name: | unkn-MI-P-A1-acn-a-04-1-UM.s1 |
| Conread position: | 3-278 |
| Cow position: | chr13:2416675-2416405 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 111, 37 |
| Conread position: | 5-351 |
| Cow position: | chr13:12214106-12213753 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 29 |
| Conread position: | 6-251 |
| Cow position: | chr13:24197770-24198005 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 234, 29 |
| Conread position: | 7-325 |
| Cow position: | chr13:4796451-4796125 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 96, 26 |
| Conread position: | 9-225 |
| Cow position: | chr13:57746472-57746253 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 101, 13 |
| Conread position: | 9-440 |
| Cow position: | chr13:26255103-26255536 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 105, 25 |
| Conread position: | 10-401 |
| Cow position: | chr13:43385416-43385026 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 57 |
| Conread position: | 11-422 |
| Cow position: | chr13:34264486-34264881 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 161 |
| Conread position: | 13-255 |
| Cow position: | chr13:14708990-14708748 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 88, 164 |
| Conread position: | 14-370 |
| Cow position: | chr13:51434866-51435225 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 92, 21 |
| Conread position: | 18-346 |
| Cow position: | chr13:26034291-26034598 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 32, 158 |
| Conread position: | 22-304 |
| Cow position: | chr13:59997183-59997473 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 91, 18 |
| Conread position: | 24-278 |
| Cow position: | chr13:48580382-48580629 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 87, 152 |
| Conread position: | 30-355 |
| Cow position: | chr13:6920992-6921309 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 9, 68 |
| Conread position: | 33-413 |
| Cow position: | chr13:38534801-38535173 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 30 |
| Conread position: | 35-199 |
| Cow position: | chr13:18541551-18541389 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 78, 96 |
| Conread position: | 35-213 |
| Cow position: | chr13:27795996-27795822 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 76, 141 |
| Conread position: | 35-453 |
| Cow position: | chr13:55407263-55406857 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 140 |
| Conread position: | 36-233 |
| Cow position: | chr13:13987712-13987916 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 77, 88 |
| Conread position: | 39-216 |
| Cow position: | chr13:20876493-20876671 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 138 |
| Conread position: | 39-241 |
| Cow position: | chr13:4659475-4659674 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 75, 42 |
| Conread position: | 39-272 |
| Cow position: | chr13:22194002-22193774 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 72, 110 |
| Conread position: | 39-273 |
| Cow position: | chr13:22985054-22984815 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 143 |
| Conread position: | 39-278 |
| Cow position: | chr13:57611818-57611579 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 74, 101 |
| Conread position: | 39-305 |
| Cow position: | chr13:18596786-18597038 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 202, 43 |
| Conread position: | 39-321 |
| Cow position: | chr13:698968-698693 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 75, 39 |
| Conread position: | 39-365 |
| Cow position: | chr13:11222839-11223160 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 196, 26 |
| Conread position: | 39-397 |
| Cow position: | chr13:19115999-19115652 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 266 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 147, 11 |
| Conread position: | 39-413 |
| Cow position: | chr13:24403778-24404150 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 134 |
| Conread position: | 39-413 |
| Cow position: | chr13:37498297-37497951 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 264 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 72, 137 |
| Conread position: | 39-416 |
| Cow position: | chr13:17597359-17596993 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 71 |
| Conread position: | 39-418 |
| Cow position: | chr13:12325679-12325328 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 36 |
| Conread position: | 39-422 |
| Cow position: | chr13:15730977-15731356 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 263 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 204, 74 |
| Conread position: | 39-426 |
| Cow position: | chr13:19014873-19015263 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 74 |
| Conread position: | 39-428 |
| Cow position: | chr13:33240111-33239719 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 136 |
| Conread position: | 39-453 |
| Cow position: | chr13:38361701-38362086 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 134 |
| Conread position: | 39-453 |
| Cow position: | chr13:45497855-45497450 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 62 |
| Conread position: | 40-157 |
| Cow position: | chr13:33503134-33503014 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 40-182 |
| Cow position: | chr13:51177746-51177600 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 40-246 |
| Cow position: | chr13:18839659-18839458 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 164 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 201, 73 |
| Conread position: | 40-424 |
| Cow position: | chr13:43803516-43803130 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 152, 33 |
| Conread position: | 40-453 |
| Cow position: | chr13:43848521-43848915 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 288 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 193, 50 |
| Conread position: | 41-229 |
| Cow position: | chr13:30950871-30951063 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 78, 163 |
| Conread position: | 41-230 |
| Cow position: | chr13:15490114-15489927 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 73, 16 |
| Conread position: | 41-418 |
| Cow position: | chr13:34885573-34885184 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 47-418 |
| Cow position: | chr13:11570416-11570784 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 196, 65 |
| Conread position: | 51-278 |
| Cow position: | chr13:10854433-10854658 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 60, 146 |
| Conread position: | 51-453 |
| Cow position: | chr13:44143825-44144222 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 127 |
| Conread position: | 52-313 |
| Cow position: | chr13:57246321-57246068 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 65, 71 |
| Conread position: | 54-410 |
| Cow position: | chr13:14079865-14080234 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 122 |
| Conread position: | 54-440 |
| Cow position: | chr13:28605997-28605601 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 117 |
| Conread position: | 59-396 |
| Cow position: | chr13:51142445-51142774 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 61-321 |
| Cow position: | chr13:2807916-2807658 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 190 |
| Conread position: | 66-413 |
| Cow position: | chr13:51241295-51240948 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 111 |
| Conread position: | 67-325 |
| Cow position: | chr13:12658269-12658015 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 47, 10 |
| Conread position: | 67-335 |
| Cow position: | chr13:5619111-5619392 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 110 |
| Conread position: | 69-409 |
| Cow position: | chr13:25955058-25955401 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 8 |
| Conread position: | 73-453 |
| Cow position: | chr13:47325338-47325711 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 74-427 |
| Cow position: | chr13:7803718-7804080 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 40, 11 |
| Conread position: | 77-418 |
| Cow position: | chr13:17169747-17169417 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 36, 101 |
| Conread position: | 93-413 |
| Cow position: | chr13:46464282-46464597 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 86 |
| Conread position: | 94-409 |
| Cow position: | chr13:34931790-34931491 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 19, 77 |
| Conread position: | 97-272 |
| Cow position: | chr13:9103087-9103252 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 142, 7 |
| Conread position: | 122-413 |
| Cow position: | chr13:20656846-20656546 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 48, 8 |
| Conread position: | 132-396 |
| Cow position: | chr13:24676162-24675894 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 112, 42 |
| Conread position: | 132-451 |
| Cow position: | chr13:21878180-21878494 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 148-418 |
| Cow position: | chr13:34336730-34336482 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 137, 26 |
| Conread position: | 149-413 |
| Cow position: | chr13:39487813-39487543 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 88, 28 |
| Conread position: | 160-413 |
| Cow position: | chr13:26943280-26943017 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 172-422 |
| Cow position: | chr13:46131553-46131803 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 9, 18 |
| Conread position: | 186-428 |
| Cow position: | chr13:15704299-15704539 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 8, 71 |
| Conread position: | 187-343 |
| Cow position: | chr13:33767607-33767768 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 54, 102 |
| Conread position: | 187-418 |
| Cow position: | chr13:24740079-24739846 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 14 |
| Conread position: | 189-382 |
| Cow position: | chr13:25883366-25883174 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 52, 7 |
| Conread position: | 189-433 |
| Cow position: | chr13:17127306-17127557 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 52, 161 |
| Conread position: | 196-425 |
| Cow position: | chr13:1367339-1367583 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 22 |
| Conread position: | 196-426 |
| Cow position: | chr13:30772768-30773014 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 212-429 |
| Cow position: | chr13:57746245-57746017 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 33, 137 |
| Conread position: | 293-413 |
| Cow position: | chr13:28590395-28590272 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 293-417 |
| Cow position: | chr13:59997690-59997809 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 293-427 |
| Cow position: | chr13:46350264-46350135 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 123, 55 |
| Conread position: | 300-417 |
| Cow position: | chr13:15489754-15489638 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 95, 59 |
| Conread position: | 310-452 |
| Cow position: | chr13:698499-698357 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 47 |
Show alignments to all cow chromosomes.