Cow genome map
| Conread name: | unkn-MI-P-A1-acn-a-04-1-UM.s1 |
| Conread position: | 1-294 |
| Cow position: | chr14:36420620-36420333 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 39, 78 |
| Conread position: | 1-428 |
| Cow position: | chr14:48415134-48415542 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 301 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 99, 33 |
| Conread position: | 2-278 |
| Cow position: | chr14:38722291-38722558 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 26, 171 |
| Conread position: | 5-257 |
| Cow position: | chr14:35685667-35685426 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 108, 35 |
| Conread position: | 6-281 |
| Cow position: | chr14:22046279-22046538 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 24-194 |
| Cow position: | chr14:29481374-29481202 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 89, 152 |
| Conread position: | 24-397 |
| Cow position: | chr14:35605873-35605498 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 154 |
| Conread position: | 24-413 |
| Cow position: | chr14:42693103-42693478 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 118, 65 |
| Conread position: | 24-434 |
| Cow position: | chr14:37983961-37983554 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 158 |
| Conread position: | 34-417 |
| Cow position: | chr14:41712483-41712846 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 41, 54 |
| Conread position: | 35-413 |
| Cow position: | chr14:40243623-40244003 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 141 |
| Conread position: | 39-212 |
| Cow position: | chr14:44787313-44787488 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 65, 11 |
| Conread position: | 39-218 |
| Cow position: | chr14:38412946-38413119 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 24, 38 |
| Conread position: | 39-233 |
| Cow position: | chr14:17462756-17462946 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 74, 105 |
| Conread position: | 39-266 |
| Cow position: | chr14:37999865-38000080 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 65, 33 |
| Conread position: | 39-268 |
| Cow position: | chr14:15813250-15813492 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 75, 31 |
| Conread position: | 39-278 |
| Cow position: | chr14:32904174-32903942 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 45, 111 |
| Conread position: | 39-281 |
| Cow position: | chr14:25994562-25994327 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 38, 96 |
| Conread position: | 39-413 |
| Cow position: | chr14:34912491-34912130 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 54 |
| Conread position: | 39-417 |
| Cow position: | chr14:47880662-47880296 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 72, 139 |
| Conread position: | 39-417 |
| Cow position: | chr14:50650001-50650366 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 39-418 |
| Cow position: | chr14:1314225-1314578 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 206, 74 |
| Conread position: | 39-423 |
| Cow position: | chr14:28007073-28007452 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 23 |
| Conread position: | 39-441 |
| Cow position: | chr14:10950047-10949658 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 134 |
| Conread position: | 39-452 |
| Cow position: | chr14:15012021-15011611 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 124 |
| Conread position: | 39-453 |
| Cow position: | chr14:44453904-44454316 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 74, 132 |
| Conread position: | 40-234 |
| Cow position: | chr14:44023730-44023918 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 71, 130 |
| Conread position: | 40-328 |
| Cow position: | chr14:17051036-17051330 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 225 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 73, 136 |
| Conread position: | 40-414 |
| Cow position: | chr14:44886006-44886382 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 46, 74 |
| Conread position: | 40-422 |
| Cow position: | chr14:45152288-45151899 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 75, 17 |
| Conread position: | 41-281 |
| Cow position: | chr14:30134386-30134143 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 72, 181 |
| Conread position: | 43-417 |
| Cow position: | chr14:19735302-19734925 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 132 |
| Conread position: | 46-347 |
| Cow position: | chr14:13835888-13835591 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 168, 65 |
| Conread position: | 47-254 |
| Cow position: | chr14:3589442-3589247 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 81 |
| Conread position: | 57-342 |
| Cow position: | chr14:17556109-17556405 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 53, 129 |
| Conread position: | 72-453 |
| Cow position: | chr14:24192819-24193197 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 36 |
| Conread position: | 81-304 |
| Cow position: | chr14:15662723-15662495 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 37, 57 |
| Conread position: | 86-409 |
| Cow position: | chr14:14245142-14245458 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 28, 50 |
| Conread position: | 97-336 |
| Cow position: | chr14:32574665-32574910 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 87, 7 |
| Conread position: | 97-448 |
| Cow position: | chr14:24738760-24739110 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 7 |
| Conread position: | 99-412 |
| Cow position: | chr14:27579259-27578957 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 150, 73 |
| Conread position: | 107-269 |
| Cow position: | chr14:23938733-23938576 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 134, 59 |
| Conread position: | 110-453 |
| Cow position: | chr14:42258489-42258820 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 67 |
| Conread position: | 121-418 |
| Cow position: | chr14:46980469-46980174 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 228 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 142, 53 |
| Conread position: | 132-417 |
| Cow position: | chr14:19340138-19339848 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 108, 40 |
| Conread position: | 132-418 |
| Cow position: | chr14:14835595-14835304 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 18, 43 |
| Conread position: | 147-325 |
| Cow position: | chr14:21864442-21864261 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 96, 14 |
| Conread position: | 147-426 |
| Cow position: | chr14:24783591-24783309 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 27 |
| Conread position: | 157-452 |
| Cow position: | chr14:45184931-45185204 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 115, 14 |
| Conread position: | 161-354 |
| Cow position: | chr14:50484391-50484591 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 82, 13 |
| Conread position: | 175-430 |
| Cow position: | chr14:27247064-27247314 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 97, 7 |
| Conread position: | 187-453 |
| Cow position: | chr14:20643063-20642805 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 54, 165 |
| Conread position: | 189-418 |
| Cow position: | chr14:3034008-3033776 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 118 |
| Conread position: | 217-418 |
| Cow position: | chr14:31810280-31810474 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 26, 61 |
| Conread position: | 229-453 |
| Cow position: | chr14:30021210-30020988 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 126 |
| Conread position: | 293-412 |
| Cow position: | chr14:38000249-38000359 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
Show alignments to all cow chromosomes.