Cow genome map
| Conread name: | unkn-MI-P-A1-acn-a-04-1-UM.s1 |
| Conread position: | 4-453 |
| Cow position: | chr15:579333-578897 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 318 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 109, 31 |
| Conread position: | 24-219 |
| Cow position: | chr15:35067201-35067005 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 75, 173 |
| Conread position: | 35-278 |
| Cow position: | chr15:39809764-39809523 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 137 |
| Conread position: | 36-418 |
| Cow position: | chr15:6523189-6523561 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 39 |
| Conread position: | 38-422 |
| Cow position: | chr15:2437355-2436988 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 278 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 75, 38 |
| Conread position: | 39-178 |
| Cow position: | chr15:37491481-37491617 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 39-180 |
| Cow position: | chr15:9075575-9075434 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 66 |
| Conread position: | 39-186 |
| Cow position: | chr15:36277941-36278089 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 39-203 |
| Cow position: | chr15:41807287-41807450 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 74, 60 |
| Conread position: | 39-231 |
| Cow position: | chr15:16989746-16989556 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 68, 135 |
| Conread position: | 39-271 |
| Cow position: | chr15:21182249-21182019 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 39-278 |
| Cow position: | chr15:5912130-5912371 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 154 |
| Conread position: | 39-286 |
| Cow position: | chr15:583098-582850 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 70, 97 |
| Conread position: | 39-331 |
| Cow position: | chr15:21802794-21802504 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 72, 132 |
| Conread position: | 39-334 |
| Cow position: | chr15:8630587-8630290 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 78 |
| Conread position: | 39-334 |
| Cow position: | chr15:16971893-16972189 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 74, 137 |
| Conread position: | 39-334 |
| Cow position: | chr15:52132094-52131791 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 137 |
| Conread position: | 39-347 |
| Cow position: | chr15:30570395-30570076 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 137 |
| Conread position: | 39-352 |
| Cow position: | chr15:13081575-13081260 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 184 |
| Conread position: | 39-353 |
| Cow position: | chr15:26867083-26866786 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 74, 93 |
| Conread position: | 39-410 |
| Cow position: | chr15:31855728-31855352 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 272 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 25, 103 |
| Conread position: | 39-412 |
| Cow position: | chr15:52869072-52868705 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 123 |
| Conread position: | 39-413 |
| Cow position: | chr15:49272185-49271828 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 122 |
| Conread position: | 39-416 |
| Cow position: | chr15:16669170-16669554 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 18 |
| Conread position: | 39-417 |
| Cow position: | chr15:25683952-25683568 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 139 |
| Conread position: | 39-418 |
| Cow position: | chr15:31935786-31935404 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 39-418 |
| Cow position: | chr15:53728024-53728400 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 14 |
| Conread position: | 39-420 |
| Cow position: | chr15:53713092-53712709 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 132 |
| Conread position: | 39-422 |
| Cow position: | chr15:49279211-49279611 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 134 |
| Conread position: | 39-440 |
| Cow position: | chr15:37633619-37633221 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 101 |
| Conread position: | 39-452 |
| Cow position: | chr15:17642448-17642055 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 39-453 |
| Cow position: | chr15:23266029-23265635 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 83 |
| Conread position: | 40-175 |
| Cow position: | chr15:1992910-1992771 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 40-278 |
| Cow position: | chr15:11287132-11287371 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 136 |
| Conread position: | 40-343 |
| Cow position: | chr15:7443674-7443966 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 126 |
| Conread position: | 40-422 |
| Cow position: | chr15:18404170-18403804 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 274 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 62, 90 |
| Conread position: | 40-441 |
| Cow position: | chr15:14810685-14811078 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 71 |
| Conread position: | 40-451 |
| Cow position: | chr15:12048491-12048891 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 117 |
| Conread position: | 41-269 |
| Cow position: | chr15:28607918-28608153 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 72, 121 |
| Conread position: | 41-273 |
| Cow position: | chr15:40066141-40065913 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 62, 40 |
| Conread position: | 41-326 |
| Cow position: | chr15:9437748-9437459 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 54, 81 |
| Conread position: | 41-398 |
| Cow position: | chr15:4622524-4622870 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 114 |
| Conread position: | 48-448 |
| Cow position: | chr15:44797022-44797428 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 9 |
| Conread position: | 50-452 |
| Cow position: | chr15:10581648-10581251 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 120 |
| Conread position: | 53-336 |
| Cow position: | chr15:12283405-12283121 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 60, 126 |
| Conread position: | 54-271 |
| Cow position: | chr15:14610006-14610230 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 57, 205 |
| Conread position: | 54-421 |
| Cow position: | chr15:1888311-1887946 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 111 |
| Conread position: | 59-453 |
| Cow position: | chr15:11997991-11997585 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 117 |
| Conread position: | 65-413 |
| Cow position: | chr15:38902244-38902576 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 47 |
| Conread position: | 72-302 |
| Cow position: | chr15:9427797-9428040 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 19, 52 |
| Conread position: | 76-272 |
| Cow position: | chr15:53335570-53335372 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 35, 102 |
| Conread position: | 97-452 |
| Cow position: | chr15:37469767-37470115 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 212 |
| Conread position: | 122-398 |
| Cow position: | chr15:35042550-35042276 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 52 |
| Conread position: | 123-277 |
| Cow position: | chr15:36582393-36582538 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 118, 45 |
| Conread position: | 132-274 |
| Cow position: | chr15:39360020-39360159 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 109, 40 |
| Conread position: | 132-357 |
| Cow position: | chr15:36864399-36864631 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 109, 35 |
| Conread position: | 145-426 |
| Cow position: | chr15:41343916-41344194 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 127, 8 |
| Conread position: | 148-428 |
| Cow position: | chr15:26365556-26365285 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 123, 25 |
| Conread position: | 163-453 |
| Cow position: | chr15:27971646-27971927 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 120, 41 |
| Conread position: | 174-417 |
| Cow position: | chr15:14974000-14974237 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 117, 22 |
| Conread position: | 187-427 |
| Cow position: | chr15:8062448-8062197 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 163 |
| Conread position: | 187-428 |
| Cow position: | chr15:38818469-38818206 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 190-395 |
| Cow position: | chr15:20613046-20612837 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 6 |
| Conread position: | 192-418 |
| Cow position: | chr15:43232990-43233225 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 52, 156 |
| Conread position: | 194-346 |
| Cow position: | chr15:3593338-3593503 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 216-413 |
| Cow position: | chr15:9072779-9072576 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 143 |
| Conread position: | 275-428 |
| Cow position: | chr15:23054306-23054457 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 138, 91 |
| Conread position: | 292-418 |
| Cow position: | chr15:5912456-5912577 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 104, 66 |
Show alignments to all cow chromosomes.