Cow genome map
| Conread name: | unkn-MI-P-A1-acn-a-04-1-UM.s1 |
| Conread position: | 1-283 |
| Cow position: | chr16:14444795-14444519 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 107, 86 |
| Conread position: | 1-452 |
| Cow position: | chr16:12242926-12243381 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 166 |
| Conread position: | 5-278 |
| Cow position: | chr16:2722425-2722700 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 171 |
| Conread position: | 10-453 |
| Cow position: | chr16:13044459-13044006 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 30 |
| Conread position: | 13-416 |
| Cow position: | chr16:14799130-14799533 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 159 |
| Conread position: | 14-274 |
| Cow position: | chr16:37508690-37508436 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 108, 160 |
| Conread position: | 14-412 |
| Cow position: | chr16:53547008-53547385 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 286 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 94, 63 |
| Conread position: | 24-319 |
| Cow position: | chr16:30109234-30109533 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 13, 81 |
| Conread position: | 24-365 |
| Cow position: | chr16:16119059-16118707 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 252 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 87, 125 |
| Conread position: | 34-334 |
| Cow position: | chr16:23301922-23301617 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 79, 136 |
| Conread position: | 35-417 |
| Cow position: | chr16:22785456-22785831 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 141 |
| Conread position: | 36-241 |
| Cow position: | chr16:13209904-13209712 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 87, 133 |
| Conread position: | 37-191 |
| Cow position: | chr16:24634955-24635113 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 39-168 |
| Cow position: | chr16:10198575-10198441 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 39-173 |
| Cow position: | chr16:37024670-37024804 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 39-232 |
| Cow position: | chr16:34563520-34563703 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 23, 73 |
| Conread position: | 39-253 |
| Cow position: | chr16:31374321-31374536 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 175 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 23, 160 |
| Conread position: | 39-269 |
| Cow position: | chr16:26075435-26075195 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 39-270 |
| Cow position: | chr16:32352699-32352472 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 64, 136 |
| Conread position: | 39-325 |
| Cow position: | chr16:43849936-43850216 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 65, 138 |
| Conread position: | 39-325 |
| Cow position: | chr16:56373298-56373587 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 39-334 |
| Cow position: | chr16:24038682-24038383 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 137 |
| Conread position: | 39-352 |
| Cow position: | chr16:23878945-23878606 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 179 |
| Conread position: | 39-374 |
| Cow position: | chr16:45552583-45552252 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 9, 130 |
| Conread position: | 39-413 |
| Cow position: | chr16:23034714-23035088 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 153 |
| Conread position: | 39-417 |
| Cow position: | chr16:45057994-45057611 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 24 |
| Conread position: | 39-418 |
| Cow position: | chr16:30572042-30572420 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 39-418 |
| Cow position: | chr16:47781887-47781506 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 140 |
| Conread position: | 39-418 |
| Cow position: | chr16:48894241-48894613 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 137 |
| Conread position: | 40-168 |
| Cow position: | chr16:38397755-38397886 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 40-421 |
| Cow position: | chr16:4294947-4295317 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 73, 50 |
| Conread position: | 41-228 |
| Cow position: | chr16:52813352-52813521 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 41-256 |
| Cow position: | chr16:14084567-14084781 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 8, 136 |
| Conread position: | 41-263 |
| Cow position: | chr16:17365672-17365451 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 81, 136 |
| Conread position: | 41-278 |
| Cow position: | chr16:4854392-4854617 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 72, 93 |
| Conread position: | 41-280 |
| Cow position: | chr16:12474228-12473983 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 41-297 |
| Cow position: | chr16:5131200-5131450 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 41-353 |
| Cow position: | chr16:52649936-52650256 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 23, 113 |
| Conread position: | 41-413 |
| Cow position: | chr16:43850246-43850617 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 141 |
| Conread position: | 41-418 |
| Cow position: | chr16:41680178-41680560 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 136 |
| Conread position: | 46-356 |
| Cow position: | chr16:2371238-2371538 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 234, 32 |
| Conread position: | 48-413 |
| Cow position: | chr16:15509505-15509142 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 9 |
| Conread position: | 52-413 |
| Cow position: | chr16:3742554-3742933 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 59, 176 |
| Conread position: | 67-311 |
| Cow position: | chr16:14423460-14423210 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 46, 109 |
| Conread position: | 107-246 |
| Cow position: | chr16:29204376-29204509 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 134, 24 |
| Conread position: | 108-410 |
| Cow position: | chr16:9703097-9703399 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 127, 69 |
| Conread position: | 111-319 |
| Cow position: | chr16:37527160-37526957 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 130, 7 |
| Conread position: | 141-350 |
| Cow position: | chr16:43741633-43741838 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 115, 32 |
| Conread position: | 168-453 |
| Cow position: | chr16:42406319-42406037 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 73, 190 |
| Conread position: | 178-423 |
| Cow position: | chr16:55909924-55910174 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 64, 11 |
| Conread position: | 180-425 |
| Cow position: | chr16:11597439-11597693 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 195 |
| Conread position: | 181-422 |
| Cow position: | chr16:16608255-16608014 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 94, 11 |
| Conread position: | 187-427 |
| Cow position: | chr16:9987837-9988085 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 174 |
| Conread position: | 187-428 |
| Cow position: | chr16:17003874-17003630 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 70, 9 |
| Conread position: | 189-423 |
| Cow position: | chr16:17432616-17432864 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 51, 57 |
| Conread position: | 189-425 |
| Cow position: | chr16:40272180-40271939 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 54, 38 |
| Conread position: | 190-433 |
| Cow position: | chr16:15093128-15093375 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 191-413 |
| Cow position: | chr16:47341367-47341596 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 53, 26 |
| Conread position: | 236-452 |
| Cow position: | chr16:31374783-31374992 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 43, 130 |
| Conread position: | 243-418 |
| Cow position: | chr16:29204672-29204845 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 13, 119 |
| Conread position: | 279-453 |
| Cow position: | chr16:36910699-36910859 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 293-429 |
| Cow position: | chr16:12473644-12473510 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 123, 61 |
| Conread position: | 293-453 |
| Cow position: | chr16:19153034-19152886 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
Show alignments to all cow chromosomes.