Cow genome map
| Conread name: | unkn-MI-P-A1-acn-a-04-1-UM.s1 |
| Conread position: | 1-221 |
| Cow position: | chr18:1196060-1195844 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 184, 34 |
| Conread position: | 12-160 |
| Cow position: | chr18:32286802-32286651 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 21-175 |
| Cow position: | chr18:32371553-32371708 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 92, 38 |
| Conread position: | 21-409 |
| Cow position: | chr18:16259836-16259444 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 161 |
| Conread position: | 24-241 |
| Cow position: | chr18:52871176-52870963 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 89, 152 |
| Conread position: | 24-258 |
| Cow position: | chr18:1129461-1129237 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 23, 124 |
| Conread position: | 24-294 |
| Cow position: | chr18:48952831-48952565 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 168, 122 |
| Conread position: | 26-278 |
| Cow position: | chr18:49436917-49436667 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 87, 150 |
| Conread position: | 33-423 |
| Cow position: | chr18:5059976-5060385 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 17, 31 |
| Conread position: | 35-352 |
| Cow position: | chr18:24663891-24664209 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 79, 139 |
| Conread position: | 35-418 |
| Cow position: | chr18:32861207-32860829 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 141 |
| Conread position: | 36-413 |
| Cow position: | chr18:1701138-1700771 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 134 |
| Conread position: | 39-234 |
| Cow position: | chr18:36456591-36456398 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 74, 134 |
| Conread position: | 39-306 |
| Cow position: | chr18:50242610-50242340 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 74, 137 |
| Conread position: | 39-332 |
| Cow position: | chr18:19213309-19213617 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 73, 297 |
| Conread position: | 39-346 |
| Cow position: | chr18:23316241-23316538 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 238 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 202, 55 |
| Conread position: | 39-393 |
| Cow position: | chr18:25846484-25846830 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 130 |
| Conread position: | 39-440 |
| Cow position: | chr18:50881040-50880636 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 135 |
| Conread position: | 39-447 |
| Cow position: | chr18:27405437-27405053 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 60 |
| Conread position: | 39-453 |
| Cow position: | chr18:22064828-22065209 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 302 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 203, 67 |
| Conread position: | 40-161 |
| Cow position: | chr18:35471011-35471136 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 40-249 |
| Cow position: | chr18:54628856-54629066 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 149, 70 |
| Conread position: | 40-343 |
| Cow position: | chr18:29081563-29081256 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 74, 82 |
| Conread position: | 40-398 |
| Cow position: | chr18:22433235-22433595 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 46 |
| Conread position: | 40-414 |
| Cow position: | chr18:39474715-39475097 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 137 |
| Conread position: | 41-280 |
| Cow position: | chr18:26866385-26866145 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 73, 44 |
| Conread position: | 42-416 |
| Cow position: | chr18:28086127-28085749 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 128 |
| Conread position: | 59-352 |
| Cow position: | chr18:53047522-53047825 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 18 |
| Conread position: | 68-223 |
| Cow position: | chr18:51332117-51331962 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 106 |
| Conread position: | 68-452 |
| Cow position: | chr18:53029228-53028857 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 86-246 |
| Cow position: | chr18:55748764-55748924 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 24, 126 |
| Conread position: | 93-255 |
| Cow position: | chr18:8170922-8170758 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 17, 77 |
| Conread position: | 104-356 |
| Cow position: | chr18:19152855-19152611 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 41, 72 |
| Conread position: | 136-269 |
| Cow position: | chr18:33147063-33146934 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 65, 35 |
| Conread position: | 141-417 |
| Cow position: | chr18:35471349-35471625 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 33 |
| Conread position: | 157-281 |
| Cow position: | chr18:31394159-31394036 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 39 |
| Conread position: | 181-426 |
| Cow position: | chr18:21766897-21767150 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 192 |
| Conread position: | 184-428 |
| Cow position: | chr18:54165991-54166244 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 12 |
| Conread position: | 191-425 |
| Cow position: | chr18:17227852-17228093 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 52, 159 |
| Conread position: | 194-388 |
| Cow position: | chr18:16539314-16539115 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 44, 8 |
| Conread position: | 196-422 |
| Cow position: | chr18:1069728-1069964 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 47, 174 |
| Conread position: | 198-402 |
| Cow position: | chr18:14804301-14804506 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 198-422 |
| Cow position: | chr18:33896238-33896007 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 47, 162 |
| Conread position: | 199-422 |
| Cow position: | chr18:37493452-37493226 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 81, 38 |
| Conread position: | 216-441 |
| Cow position: | chr18:21290393-21290623 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 118 |
| Conread position: | 241-452 |
| Cow position: | chr18:14480787-14480571 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 253-453 |
| Cow position: | chr18:23504255-23504449 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 18, 70 |
| Conread position: | 293-418 |
| Cow position: | chr18:48550279-48550157 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.