Cow genome map
| Conread name: | unkn-MI-P-A1-acn-a-04-1-UM.s1 |
| Conread position: | 1-281 |
| Cow position: | chr2:9710090-9709811 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 26, 166 |
| Conread position: | 1-396 |
| Cow position: | chr2:23062300-23062688 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 32 |
| Conread position: | 3-241 |
| Cow position: | chr2:38805726-38805963 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 20, 175 |
| Conread position: | 3-360 |
| Cow position: | chr2:68962486-68962833 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 25, 102 |
| Conread position: | 3-452 |
| Cow position: | chr2:82827761-82828190 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 20 |
| Conread position: | 5-334 |
| Cow position: | chr2:18274048-18274380 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 28 |
| Conread position: | 6-328 |
| Cow position: | chr2:7365606-7365929 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 239 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 104, 30 |
| Conread position: | 8-278 |
| Cow position: | chr2:13685210-13684950 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 205 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 17, 103 |
| Conread position: | 12-418 |
| Cow position: | chr2:7212407-7212006 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 294 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 80, 75 |
| Conread position: | 23-368 |
| Cow position: | chr2:62463389-62463749 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 153 |
| Conread position: | 24-187 |
| Cow position: | chr2:12910790-12910625 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 78, 20 |
| Conread position: | 24-428 |
| Cow position: | chr2:9043797-9043393 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 72 |
| Conread position: | 24-453 |
| Cow position: | chr2:7778885-7779311 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 111 |
| Conread position: | 25-449 |
| Cow position: | chr2:21697125-21697539 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 96 |
| Conread position: | 35-396 |
| Cow position: | chr2:56822742-56823108 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 265 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 87, 133 |
| Conread position: | 35-418 |
| Cow position: | chr2:13048798-13048425 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 136 |
| Conread position: | 36-327 |
| Cow position: | chr2:40370189-40370473 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 205, 60 |
| Conread position: | 39-168 |
| Cow position: | chr2:71121826-71121693 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 39-213 |
| Cow position: | chr2:78912219-78912391 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 71 |
| Conread position: | 39-216 |
| Cow position: | chr2:18760070-18759892 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 87, 113 |
| Conread position: | 39-224 |
| Cow position: | chr2:25112719-25112541 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 71, 61 |
| Conread position: | 39-233 |
| Cow position: | chr2:53280969-53280772 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 65, 134 |
| Conread position: | 39-253 |
| Cow position: | chr2:51826587-51826787 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 74, 23 |
| Conread position: | 39-278 |
| Cow position: | chr2:41417651-41417880 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 201, 45 |
| Conread position: | 39-281 |
| Cow position: | chr2:15273302-15273532 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 71, 22 |
| Conread position: | 39-297 |
| Cow position: | chr2:19750917-19750657 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 75, 65 |
| Conread position: | 39-320 |
| Cow position: | chr2:52183535-52183252 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 67, 123 |
| Conread position: | 39-328 |
| Cow position: | chr2:10566888-10566613 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 145, 70 |
| Conread position: | 39-335 |
| Cow position: | chr2:5767465-5767752 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 65, 131 |
| Conread position: | 39-345 |
| Cow position: | chr2:23811686-23811406 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 255, 59 |
| Conread position: | 39-352 |
| Cow position: | chr2:69982943-69982648 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 60, 24 |
| Conread position: | 39-426 |
| Cow position: | chr2:74848455-74848044 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 73, 56 |
| Conread position: | 39-428 |
| Cow position: | chr2:4927489-4927869 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 289 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 202, 65 |
| Conread position: | 39-447 |
| Cow position: | chr2:14037137-14037525 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 39-452 |
| Cow position: | chr2:31420588-31420189 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 301 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 26, 132 |
| Conread position: | 40-194 |
| Cow position: | chr2:16522186-16522031 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 73, 21 |
| Conread position: | 40-229 |
| Cow position: | chr2:20534042-20534229 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 73, 25 |
| Conread position: | 40-271 |
| Cow position: | chr2:45681198-45680961 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 74, 206 |
| Conread position: | 40-448 |
| Cow position: | chr2:74387541-74387939 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 125 |
| Conread position: | 40-450 |
| Cow position: | chr2:72599402-72598996 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 136 |
| Conread position: | 41-180 |
| Cow position: | chr2:59592420-59592563 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 41-226 |
| Cow position: | chr2:73204847-73205032 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 67, 135 |
| Conread position: | 41-272 |
| Cow position: | chr2:46130346-46130576 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 69, 109 |
| Conread position: | 41-350 |
| Cow position: | chr2:12776991-12777286 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 32, 136 |
| Conread position: | 41-414 |
| Cow position: | chr2:3181931-3182297 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 67, 134 |
| Conread position: | 41-416 |
| Cow position: | chr2:33790897-33791270 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 88 |
| Conread position: | 42-270 |
| Cow position: | chr2:27782588-27782821 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 8, 134 |
| Conread position: | 46-413 |
| Cow position: | chr2:43344706-43345079 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 130 |
| Conread position: | 52-274 |
| Cow position: | chr2:49441407-49441186 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 59, 100 |
| Conread position: | 52-278 |
| Cow position: | chr2:76054835-76055041 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 52-281 |
| Cow position: | chr2:19130722-19130504 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 54-269 |
| Cow position: | chr2:47962419-47962619 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 187, 59 |
| Conread position: | 61-346 |
| Cow position: | chr2:39412213-39411916 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 183, 43 |
| Conread position: | 66-418 |
| Cow position: | chr2:32393947-32393615 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 67-344 |
| Cow position: | chr2:80603768-80604056 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 110 |
| Conread position: | 67-422 |
| Cow position: | chr2:4478367-4477999 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 39, 177 |
| Conread position: | 68-413 |
| Cow position: | chr2:41491201-41490849 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 108 |
| Conread position: | 72-278 |
| Cow position: | chr2:44983112-44983320 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 5, 107 |
| Conread position: | 74-278 |
| Cow position: | chr2:3730660-3730460 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 98 |
| Conread position: | 75-417 |
| Cow position: | chr2:53716436-53716768 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 97 |
| Conread position: | 86-277 |
| Cow position: | chr2:38583378-38583571 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 24, 90 |
| Conread position: | 103-386 |
| Cow position: | chr2:57501749-57501473 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 194, 75 |
| Conread position: | 122-413 |
| Cow position: | chr2:9243200-9242923 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 158, 33 |
| Conread position: | 122-418 |
| Cow position: | chr2:20281995-20281695 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 119, 49 |
| Conread position: | 132-413 |
| Cow position: | chr2:54890751-54890494 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 147, 42 |
| Conread position: | 142-453 |
| Cow position: | chr2:42286017-42286331 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 244 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 99, 30 |
| Conread position: | 143-351 |
| Cow position: | chr2:77968028-77968241 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 96, 59 |
| Conread position: | 170-410 |
| Cow position: | chr2:33391324-33391558 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 73, 44 |
| Conread position: | 176-453 |
| Cow position: | chr2:39196317-39196592 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 17, 76 |
| Conread position: | 187-394 |
| Cow position: | chr2:69702076-69702292 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 188-428 |
| Cow position: | chr2:24830490-24830726 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 8 |
| Conread position: | 189-395 |
| Cow position: | chr2:3628035-3628246 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 52, 7 |
| Conread position: | 189-429 |
| Cow position: | chr2:46251276-46251508 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 80 |
| Conread position: | 190-427 |
| Cow position: | chr2:61078605-61078358 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 63 |
| Conread position: | 191-418 |
| Cow position: | chr2:84133019-84132788 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 11, 162 |
| Conread position: | 192-413 |
| Cow position: | chr2:62673817-62674031 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 78 |
| Conread position: | 197-417 |
| Cow position: | chr2:4830384-4830610 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 43, 131 |
| Conread position: | 201-425 |
| Cow position: | chr2:20886894-20887124 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 42, 100 |
| Conread position: | 202-417 |
| Cow position: | chr2:71121452-71121236 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 42, 35 |
| Conread position: | 214-413 |
| Cow position: | chr2:37003714-37003509 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 27, 145 |
| Conread position: | 276-453 |
| Cow position: | chr2:64073900-64073731 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 10, 0 |
Show alignments to all cow chromosomes.