Cow genome map
| Conread name: | unkn-MI-P-A1-acn-a-04-1-UM.s1 |
| Conread position: | 1-278 |
| Cow position: | chr21:38021578-38021310 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 112, 57 |
| Conread position: | 6-343 |
| Cow position: | chr21:23285971-23286303 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 29 |
| Conread position: | 8-187 |
| Cow position: | chr21:454988-454811 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 161, 85 |
| Conread position: | 9-230 |
| Cow position: | chr21:27678687-27678472 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 104, 14 |
| Conread position: | 10-212 |
| Cow position: | chr21:28651022-28650820 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 26, 76 |
| Conread position: | 10-265 |
| Cow position: | chr21:37170440-37170181 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 68, 95 |
| Conread position: | 10-278 |
| Cow position: | chr21:42396658-42396395 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 103, 25 |
| Conread position: | 11-453 |
| Cow position: | chr21:16165976-16166394 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 301 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 166, 12 |
| Conread position: | 21-437 |
| Cow position: | chr21:45963066-45962646 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 145 |
| Conread position: | 24-413 |
| Cow position: | chr21:15543292-15543678 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 39 |
| Conread position: | 24-430 |
| Cow position: | chr21:45448246-45447848 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 121 |
| Conread position: | 34-410 |
| Cow position: | chr21:6667844-6667475 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 273 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 80, 70 |
| Conread position: | 35-163 |
| Cow position: | chr21:25019650-25019518 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 35-233 |
| Cow position: | chr21:27089301-27089506 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 35-256 |
| Cow position: | chr21:9976835-9976621 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 13, 61 |
| Conread position: | 35-346 |
| Cow position: | chr21:30567319-30567611 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 231 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 206, 75 |
| Conread position: | 39-173 |
| Cow position: | chr21:24971979-24972117 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 39-174 |
| Cow position: | chr21:39527531-39527394 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 39-241 |
| Cow position: | chr21:6151541-6151335 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 39-241 |
| Cow position: | chr21:6282568-6282377 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 71, 97 |
| Conread position: | 39-306 |
| Cow position: | chr21:12079860-12079594 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 69, 83 |
| Conread position: | 39-418 |
| Cow position: | chr21:22942023-22941653 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 65 |
| Conread position: | 39-439 |
| Cow position: | chr21:26741877-26742256 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 287 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 74, 140 |
| Conread position: | 40-278 |
| Cow position: | chr21:37283160-37282933 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 200, 76 |
| Conread position: | 40-370 |
| Cow position: | chr21:28709429-28709090 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 69, 282 |
| Conread position: | 40-413 |
| Cow position: | chr21:17671737-17672085 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 67, 102 |
| Conread position: | 40-418 |
| Cow position: | chr21:1991925-1991554 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 201, 31 |
| Conread position: | 41-452 |
| Cow position: | chr21:39074836-39075244 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 109 |
| Conread position: | 42-418 |
| Cow position: | chr21:26631817-26632185 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 124 |
| Conread position: | 57-233 |
| Cow position: | chr21:39766570-39766401 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 20, 78 |
| Conread position: | 67-260 |
| Cow position: | chr21:33975266-33975069 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 160 |
| Conread position: | 67-329 |
| Cow position: | chr21:27520786-27521067 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 48, 107 |
| Conread position: | 67-342 |
| Cow position: | chr21:26579923-26579643 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 47, 110 |
| Conread position: | 77-413 |
| Cow position: | chr21:23399578-23399227 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 39, 57 |
| Conread position: | 79-453 |
| Cow position: | chr21:12756545-12756148 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 34, 64 |
| Conread position: | 111-316 |
| Cow position: | chr21:16679358-16679151 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 169, 63 |
| Conread position: | 132-416 |
| Cow position: | chr21:37356211-37355944 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 111, 41 |
| Conread position: | 138-416 |
| Cow position: | chr21:5597698-5597427 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 50, 9 |
| Conread position: | 146-425 |
| Cow position: | chr21:3614566-3614302 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 95, 27 |
| Conread position: | 148-416 |
| Cow position: | chr21:37940967-37941219 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 146, 26 |
| Conread position: | 148-418 |
| Cow position: | chr21:25019398-25019138 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 217 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 132, 26 |
| Conread position: | 148-430 |
| Cow position: | chr21:40442074-40442356 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 26 |
| Conread position: | 196-426 |
| Cow position: | chr21:22944937-22944701 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 45, 176 |
| Conread position: | 197-431 |
| Cow position: | chr21:20575275-20575515 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 79, 41 |
| Conread position: | 198-413 |
| Cow position: | chr21:24972115-24972331 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 82, 41 |
| Conread position: | 218-426 |
| Cow position: | chr21:27089645-27089858 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 25, 103 |
| Conread position: | 298-450 |
| Cow position: | chr21:33974887-33974739 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 68, 115 |
Show alignments to all cow chromosomes.