Cow genome map
| Conread name: | unkn-MI-P-A1-acn-a-04-1-UM.s1 |
| Conread position: | 1-417 |
| Cow position: | chr24:43350495-43350909 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 36 |
| Conread position: | 9-417 |
| Cow position: | chr24:17762671-17763078 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 99 |
| Conread position: | 22-413 |
| Cow position: | chr24:35835456-35835834 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 151 |
| Conread position: | 24-297 |
| Cow position: | chr24:1295685-1295957 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 147 |
| Conread position: | 35-268 |
| Cow position: | chr24:16552438-16552668 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 35-416 |
| Cow position: | chr24:41404766-41405136 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 42 |
| Conread position: | 35-418 |
| Cow position: | chr24:17417654-17417265 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 39 |
| Conread position: | 35-426 |
| Cow position: | chr24:37385802-37386178 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 127 |
| Conread position: | 36-271 |
| Cow position: | chr24:23253410-23253643 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 39-241 |
| Cow position: | chr24:3089191-3088982 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 69, 26 |
| Conread position: | 39-241 |
| Cow position: | chr24:42338947-42338748 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 74, 137 |
| Conread position: | 39-242 |
| Cow position: | chr24:28598810-28599006 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 39-278 |
| Cow position: | chr24:43491144-43491380 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 74, 125 |
| Conread position: | 39-283 |
| Cow position: | chr24:19627995-19627741 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 49, 145 |
| Conread position: | 39-307 |
| Cow position: | chr24:25935132-25934855 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 72, 22 |
| Conread position: | 39-334 |
| Cow position: | chr24:33274416-33274122 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 70, 33 |
| Conread position: | 39-345 |
| Cow position: | chr24:31301115-31301420 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 135 |
| Conread position: | 39-413 |
| Cow position: | chr24:14913015-14913385 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 109 |
| Conread position: | 39-416 |
| Cow position: | chr24:30899259-30899636 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 72, 11 |
| Conread position: | 39-417 |
| Cow position: | chr24:42817827-42817448 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 15 |
| Conread position: | 39-418 |
| Cow position: | chr24:6423511-6423877 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 284 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 68, 30 |
| Conread position: | 39-419 |
| Cow position: | chr24:6177964-6177583 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 117 |
| Conread position: | 39-453 |
| Cow position: | chr24:32579737-32579340 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 31 |
| Conread position: | 40-254 |
| Cow position: | chr24:44483838-44484042 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 73, 94 |
| Conread position: | 41-254 |
| Cow position: | chr24:36550507-36550719 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 70, 132 |
| Conread position: | 44-422 |
| Cow position: | chr24:31845258-31845634 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 274 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 5, 129 |
| Conread position: | 54-423 |
| Cow position: | chr24:22839048-22839428 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 273 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 115, 35 |
| Conread position: | 60-443 |
| Cow position: | chr24:25246574-25246202 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 17 |
| Conread position: | 70-417 |
| Cow position: | chr24:9866937-9867285 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 257 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 20, 109 |
| Conread position: | 81-418 |
| Cow position: | chr24:38644143-38643807 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 250 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 27, 33 |
| Conread position: | 88-278 |
| Cow position: | chr24:621074-620889 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 89-364 |
| Cow position: | chr24:36853863-36853590 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 24, 86 |
| Conread position: | 98-365 |
| Cow position: | chr24:21714699-21714968 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 143, 6 |
| Conread position: | 122-362 |
| Cow position: | chr24:36097940-36097700 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 100, 48 |
| Conread position: | 134-373 |
| Cow position: | chr24:25967080-25966840 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 137, 28 |
| Conread position: | 168-413 |
| Cow position: | chr24:15475128-15474880 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 35, 188 |
| Conread position: | 196-453 |
| Cow position: | chr24:19961106-19961357 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 228-453 |
| Cow position: | chr24:25343439-25343217 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 14, 125 |
| Conread position: | 284-452 |
| Cow position: | chr24:29515804-29515966 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 293-426 |
| Cow position: | chr24:25934706-25934580 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
Show alignments to all cow chromosomes.