Cow genome map
| Conread name: | unkn-MI-P-A1-acn-a-04-1-UM.s1 |
| Conread position: | 2-207 |
| Cow position: | chr29:1711660-1711456 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 111, 38 |
| Conread position: | 2-399 |
| Cow position: | chr29:34330606-34331014 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 33 |
| Conread position: | 7-246 |
| Cow position: | chr29:849699-849458 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 105, 62 |
| Conread position: | 24-235 |
| Cow position: | chr29:30814280-30814075 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 84, 50 |
| Conread position: | 24-419 |
| Cow position: | chr29:16360219-16359831 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 133 |
| Conread position: | 36-172 |
| Cow position: | chr29:13654043-13653906 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 36-453 |
| Cow position: | chr29:2480763-2481158 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 28 |
| Conread position: | 39-191 |
| Cow position: | chr29:18361106-18361261 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 72, 137 |
| Conread position: | 39-233 |
| Cow position: | chr29:19252852-19252663 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 74, 31 |
| Conread position: | 39-254 |
| Cow position: | chr29:28115741-28115524 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 143, 90 |
| Conread position: | 39-260 |
| Cow position: | chr29:44028377-44028164 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 21, 25 |
| Conread position: | 39-278 |
| Cow position: | chr29:7892375-7892613 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 75, 138 |
| Conread position: | 39-374 |
| Cow position: | chr29:30920794-30921152 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 65, 336 |
| Conread position: | 39-419 |
| Cow position: | chr29:3346543-3346176 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 50 |
| Conread position: | 39-419 |
| Cow position: | chr29:21198042-21198442 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 111 |
| Conread position: | 39-426 |
| Cow position: | chr29:23989082-23988693 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 288 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 72, 83 |
| Conread position: | 39-428 |
| Cow position: | chr29:8890676-8891061 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 140 |
| Conread position: | 39-444 |
| Cow position: | chr29:35037315-35036915 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 136 |
| Conread position: | 39-451 |
| Cow position: | chr29:7738109-7738513 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 137 |
| Conread position: | 39-453 |
| Cow position: | chr29:8907108-8906713 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 25 |
| Conread position: | 39-453 |
| Cow position: | chr29:18337965-18338360 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 26 |
| Conread position: | 41-273 |
| Cow position: | chr29:681959-682176 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 68, 38 |
| Conread position: | 43-270 |
| Cow position: | chr29:34392387-34392158 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 133 |
| Conread position: | 47-326 |
| Cow position: | chr29:795175-794887 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 62, 124 |
| Conread position: | 54-270 |
| Cow position: | chr29:8685565-8685353 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 56, 122 |
| Conread position: | 57-311 |
| Cow position: | chr29:12193730-12193482 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 184, 57 |
| Conread position: | 57-427 |
| Cow position: | chr29:3823107-3822740 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 57, 213 |
| Conread position: | 70-450 |
| Cow position: | chr29:19931886-19931516 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 66 |
| Conread position: | 85-450 |
| Cow position: | chr29:4459135-4458777 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 270 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 28, 107 |
| Conread position: | 107-241 |
| Cow position: | chr29:24442806-24442935 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 112-278 |
| Cow position: | chr29:5174498-5174337 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 129, 60 |
| Conread position: | 113-412 |
| Cow position: | chr29:2847910-2848206 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 126, 21 |
| Conread position: | 122-418 |
| Cow position: | chr29:22454332-22454619 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 113, 29 |
| Conread position: | 173-418 |
| Cow position: | chr29:37208225-37207971 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 30, 200 |
| Conread position: | 178-418 |
| Cow position: | chr29:13040099-13040329 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 65, 28 |
| Conread position: | 178-429 |
| Cow position: | chr29:26224486-26224227 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 63, 6 |
| Conread position: | 187-412 |
| Cow position: | chr29:15920006-15919775 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 16, 171 |
| Conread position: | 196-427 |
| Cow position: | chr29:22332377-22332619 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 56 |
| Conread position: | 197-429 |
| Cow position: | chr29:7749751-7749993 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 44, 173 |
| Conread position: | 209-418 |
| Cow position: | chr29:30813860-30813650 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 231-425 |
| Cow position: | chr29:28950187-28949990 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 10, 123 |
| Conread position: | 274-437 |
| Cow position: | chr29:8685384-8685218 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 13, 79 |
Show alignments to all cow chromosomes.