Cow genome map
| Conread name: | unkn-MI-P-A1-acn-a-04-1-UM.s1 |
| Conread position: | 2-208 |
| Cow position: | chr3:28707535-28707337 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 67, 35 |
| Conread position: | 2-334 |
| Cow position: | chr3:45642090-45641760 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 34, 148 |
| Conread position: | 3-406 |
| Cow position: | chr3:62812391-62812769 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 280 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 3-453 |
| Cow position: | chr3:45735773-45735298 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 311 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 25, 169 |
| Conread position: | 4-241 |
| Cow position: | chr3:21283021-21282796 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 107, 19 |
| Conread position: | 4-352 |
| Cow position: | chr3:12531526-12531878 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 31 |
| Conread position: | 5-344 |
| Cow position: | chr3:22054047-22054375 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 8-198 |
| Cow position: | chr3:49414164-49414354 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 12-413 |
| Cow position: | chr3:17519212-17519618 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 38 |
| Conread position: | 14-418 |
| Cow position: | chr3:23274388-23274795 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 150 |
| Conread position: | 32-418 |
| Cow position: | chr3:27633439-27633827 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 144 |
| Conread position: | 35-200 |
| Cow position: | chr3:36538329-36538504 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 62, 147 |
| Conread position: | 35-349 |
| Cow position: | chr3:15091428-15091128 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 239 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 78, 129 |
| Conread position: | 35-433 |
| Cow position: | chr3:55106857-55107249 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 135 |
| Conread position: | 35-453 |
| Cow position: | chr3:23478793-23478388 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 36-236 |
| Cow position: | chr3:83392969-83393177 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 36-402 |
| Cow position: | chr3:12311639-12311271 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 106 |
| Conread position: | 36-408 |
| Cow position: | chr3:60854284-60854658 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 132 |
| Conread position: | 39-205 |
| Cow position: | chr3:5317203-5317371 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 74, 137 |
| Conread position: | 39-261 |
| Cow position: | chr3:52817560-52817339 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 74, 137 |
| Conread position: | 39-269 |
| Cow position: | chr3:1339460-1339235 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 68, 138 |
| Conread position: | 39-273 |
| Cow position: | chr3:31528381-31528165 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 39-277 |
| Cow position: | chr3:74723880-74724119 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 137 |
| Conread position: | 39-278 |
| Cow position: | chr3:34165095-34165329 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 72, 25 |
| Conread position: | 39-278 |
| Cow position: | chr3:64082013-64081787 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 202, 23 |
| Conread position: | 39-278 |
| Cow position: | chr3:77589942-77589715 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 25, 30 |
| Conread position: | 39-281 |
| Cow position: | chr3:43004244-43004487 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 140 |
| Conread position: | 39-312 |
| Cow position: | chr3:36514804-36515069 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 79, 43 |
| Conread position: | 39-356 |
| Cow position: | chr3:68127645-68127331 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 244 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 74, 128 |
| Conread position: | 39-365 |
| Cow position: | chr3:54328802-54329124 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 75, 42 |
| Conread position: | 39-396 |
| Cow position: | chr3:74846165-74846527 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 33, 145 |
| Conread position: | 39-413 |
| Cow position: | chr3:21332261-21332623 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 36 |
| Conread position: | 39-413 |
| Cow position: | chr3:24532380-24531998 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 127 |
| Conread position: | 39-418 |
| Cow position: | chr3:77468518-77468131 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 103 |
| Conread position: | 39-428 |
| Cow position: | chr3:50500117-50499748 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 202, 44 |
| Conread position: | 39-444 |
| Cow position: | chr3:8754013-8753609 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 139 |
| Conread position: | 39-451 |
| Cow position: | chr3:1549869-1549439 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 92 |
| Conread position: | 40-261 |
| Cow position: | chr3:31286348-31286561 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 73, 49 |
| Conread position: | 40-278 |
| Cow position: | chr3:39385553-39385778 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 73, 31 |
| Conread position: | 40-278 |
| Cow position: | chr3:73154505-73154281 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 73, 106 |
| Conread position: | 40-357 |
| Cow position: | chr3:41860805-41861104 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 17, 96 |
| Conread position: | 41-256 |
| Cow position: | chr3:82544062-82543857 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 72, 92 |
| Conread position: | 41-278 |
| Cow position: | chr3:63334155-63334387 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 41-324 |
| Cow position: | chr3:78442330-78442625 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 30 |
| Conread position: | 41-327 |
| Cow position: | chr3:2285242-2284951 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 70, 36 |
| Conread position: | 41-413 |
| Cow position: | chr3:26581514-26581883 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 136 |
| Conread position: | 41-413 |
| Cow position: | chr3:79315731-79315363 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 11 |
| Conread position: | 41-416 |
| Cow position: | chr3:35028849-35029236 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 70, 235 |
| Conread position: | 41-450 |
| Cow position: | chr3:43966865-43967263 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 296 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 40, 53 |
| Conread position: | 46-254 |
| Cow position: | chr3:69147991-69148199 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 65, 100 |
| Conread position: | 46-263 |
| Cow position: | chr3:52658045-52657833 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 24, 83 |
| Conread position: | 46-404 |
| Cow position: | chr3:60947643-60948001 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 131 |
| Conread position: | 46-416 |
| Cow position: | chr3:18218418-18218789 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 77 |
| Conread position: | 46-453 |
| Cow position: | chr3:56042177-56042565 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 85 |
| Conread position: | 48-352 |
| Cow position: | chr3:32773745-32773433 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 128 |
| Conread position: | 58-372 |
| Cow position: | chr3:3690166-3690476 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 183, 34 |
| Conread position: | 67-403 |
| Cow position: | chr3:9419707-9420050 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 41, 84 |
| Conread position: | 68-243 |
| Cow position: | chr3:5545481-5545313 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 44, 21 |
| Conread position: | 69-422 |
| Cow position: | chr3:16056203-16056563 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 262 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 20, 112 |
| Conread position: | 74-299 |
| Cow position: | chr3:73418583-73418347 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 29, 108 |
| Conread position: | 77-319 |
| Cow position: | chr3:13527143-13526904 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 36, 100 |
| Conread position: | 77-320 |
| Cow position: | chr3:58348994-58348749 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 112 |
| Conread position: | 78-278 |
| Cow position: | chr3:6798480-6798674 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 40, 97 |
| Conread position: | 80-281 |
| Cow position: | chr3:81919402-81919596 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 161, 41 |
| Conread position: | 92-246 |
| Cow position: | chr3:27879423-27879576 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 21, 85 |
| Conread position: | 97-350 |
| Cow position: | chr3:56164260-56164004 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 32, 7 |
| Conread position: | 97-417 |
| Cow position: | chr3:5084637-5084961 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 55, 7 |
| Conread position: | 98-409 |
| Cow position: | chr3:65392567-65392244 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 241 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 15, 77 |
| Conread position: | 101-416 |
| Cow position: | chr3:47498008-47497709 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 142, 51 |
| Conread position: | 103-418 |
| Cow position: | chr3:85086337-85086042 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 179, 71 |
| Conread position: | 104-423 |
| Cow position: | chr3:84153796-84153480 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 101, 59 |
| Conread position: | 146-418 |
| Cow position: | chr3:77157758-77157512 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 95, 28 |
| Conread position: | 171-453 |
| Cow position: | chr3:36538502-36538782 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 30, 75 |
| Conread position: | 178-414 |
| Cow position: | chr3:24261592-24261832 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 181-412 |
| Cow position: | chr3:8275865-8275629 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 58, 45 |
| Conread position: | 186-452 |
| Cow position: | chr3:27879563-27879835 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 187-426 |
| Cow position: | chr3:73827183-73826938 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 187-427 |
| Cow position: | chr3:13478632-13478393 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 89, 9 |
| Conread position: | 212-413 |
| Cow position: | chr3:55460108-55460312 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 144 |
| Conread position: | 293-453 |
| Cow position: | chr3:56711338-56711492 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 149, 54 |
| Conread position: | 300-453 |
| Cow position: | chr3:80928637-80928784 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 47, 0 |
Show alignments to all cow chromosomes.