Cow genome map
| Conread name: | unkn-MI-P-A1-acn-a-04-1-UM.s1 |
| Conread position: | 1-278 |
| Cow position: | chr4:31585994-31586260 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 107, 23 |
| Conread position: | 1-428 |
| Cow position: | chr4:58873848-58873445 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 112, 30 |
| Conread position: | 2-308 |
| Cow position: | chr4:36857221-36856915 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 112, 74 |
| Conread position: | 4-413 |
| Cow position: | chr4:53641919-53641525 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 30 |
| Conread position: | 5-255 |
| Cow position: | chr4:59809353-59809589 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 10-315 |
| Cow position: | chr4:32140672-32140977 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 14-278 |
| Cow position: | chr4:25924362-25924620 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 32, 123 |
| Conread position: | 24-323 |
| Cow position: | chr4:9128337-9128028 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 89, 52 |
| Conread position: | 24-418 |
| Cow position: | chr4:34043012-34043426 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 284 |
| Conread position: | 24-453 |
| Cow position: | chr4:49742148-49741720 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 46 |
| Conread position: | 35-278 |
| Cow position: | chr4:5886913-5886678 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 73, 141 |
| Conread position: | 35-341 |
| Cow position: | chr4:2443318-2443627 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 133 |
| Conread position: | 35-411 |
| Cow position: | chr4:41975144-41975510 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 277 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 73, 121 |
| Conread position: | 35-452 |
| Cow position: | chr4:60639636-60640033 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 289 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 124, 71 |
| Conread position: | 35-453 |
| Cow position: | chr4:60662973-60662575 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 297 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 124, 76 |
| Conread position: | 36-200 |
| Cow position: | chr4:22891523-22891687 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 80, 135 |
| Conread position: | 36-312 |
| Cow position: | chr4:35366984-35367278 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 134, 60 |
| Conread position: | 38-418 |
| Cow position: | chr4:58432390-58432768 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 138 |
| Conread position: | 39-252 |
| Cow position: | chr4:58830303-58830499 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 86, 46 |
| Conread position: | 39-259 |
| Cow position: | chr4:52596974-52597197 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 57, 91 |
| Conread position: | 39-271 |
| Cow position: | chr4:15046457-15046225 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 85, 134 |
| Conread position: | 39-278 |
| Cow position: | chr4:4519723-4519491 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 67, 137 |
| Conread position: | 39-311 |
| Cow position: | chr4:6629756-6630024 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 202, 106 |
| Conread position: | 39-324 |
| Cow position: | chr4:57652791-57652493 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 225 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 37, 143 |
| Conread position: | 39-328 |
| Cow position: | chr4:63928244-63928537 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 72, 96 |
| Conread position: | 39-339 |
| Cow position: | chr4:57565648-57565953 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 32 |
| Conread position: | 39-380 |
| Cow position: | chr4:36759860-36759501 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 140 |
| Conread position: | 39-383 |
| Cow position: | chr4:5784288-5783956 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 146 |
| Conread position: | 39-417 |
| Cow position: | chr4:57221642-57222025 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 137 |
| Conread position: | 39-452 |
| Cow position: | chr4:5188434-5188838 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 135 |
| Conread position: | 39-453 |
| Cow position: | chr4:9822721-9822317 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 35 |
| Conread position: | 40-168 |
| Cow position: | chr4:6794058-6793927 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 68, 44 |
| Conread position: | 40-253 |
| Cow position: | chr4:49881420-49881628 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 78, 39 |
| Conread position: | 40-324 |
| Cow position: | chr4:31002782-31003075 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 136 |
| Conread position: | 40-418 |
| Cow position: | chr4:29067080-29067443 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 12 |
| Conread position: | 40-418 |
| Cow position: | chr4:60159139-60159509 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 137, 11 |
| Conread position: | 40-423 |
| Cow position: | chr4:68106793-68107167 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 274 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 9, 14 |
| Conread position: | 40-427 |
| Cow position: | chr4:39647229-39646861 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 203, 32 |
| Conread position: | 41-444 |
| Cow position: | chr4:58855945-58856340 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 46-346 |
| Cow position: | chr4:22506817-22507120 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 73 |
| Conread position: | 52-242 |
| Cow position: | chr4:4029392-4029203 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 59, 124 |
| Conread position: | 54-426 |
| Cow position: | chr4:47511589-47511213 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 95 |
| Conread position: | 68-260 |
| Cow position: | chr4:27444596-27444403 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 46, 112 |
| Conread position: | 69-274 |
| Cow position: | chr4:4192741-4192543 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 67 |
| Conread position: | 70-453 |
| Cow position: | chr4:21163193-21162811 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 108 |
| Conread position: | 73-453 |
| Cow position: | chr4:46874967-46875348 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 75-357 |
| Cow position: | chr4:20925471-20925755 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 37, 93 |
| Conread position: | 78-261 |
| Cow position: | chr4:32749999-32749830 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 85, 32 |
| Conread position: | 80-286 |
| Cow position: | chr4:54347738-54347535 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 33, 96 |
| Conread position: | 111-274 |
| Cow position: | chr4:51905772-51905613 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 130, 77 |
| Conread position: | 122-416 |
| Cow position: | chr4:10722894-10722606 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 122, 56 |
| Conread position: | 132-346 |
| Cow position: | chr4:27228951-27228724 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 42 |
| Conread position: | 132-351 |
| Cow position: | chr4:24713174-24713402 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 111, 42 |
| Conread position: | 132-448 |
| Cow position: | chr4:2237760-2238062 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 133, 19 |
| Conread position: | 146-293 |
| Cow position: | chr4:1059217-1059359 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 95, 28 |
| Conread position: | 152-428 |
| Cow position: | chr4:51289879-51289604 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 8, 79 |
| Conread position: | 161-414 |
| Cow position: | chr4:17176581-17176350 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 167-453 |
| Cow position: | chr4:59565998-59565710 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 60, 29 |
| Conread position: | 172-417 |
| Cow position: | chr4:45112832-45113072 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 174-354 |
| Cow position: | chr4:9106481-9106293 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 79 |
| Conread position: | 174-418 |
| Cow position: | chr4:14564470-14564716 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 69, 10 |
| Conread position: | 178-453 |
| Cow position: | chr4:6793801-6793535 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 180-357 |
| Cow position: | chr4:13926224-13926411 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 67 |
| Conread position: | 184-426 |
| Cow position: | chr4:18802957-18803199 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 91, 50 |
| Conread position: | 190-426 |
| Cow position: | chr4:36816816-36816586 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 87, 14 |
| Conread position: | 192-417 |
| Cow position: | chr4:13818320-13818539 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 51, 69 |
| Conread position: | 196-432 |
| Cow position: | chr4:61982975-61983218 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 57, 145 |
| Conread position: | 224-411 |
| Cow position: | chr4:9128083-9127908 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 241-416 |
| Cow position: | chr4:4300916-4300729 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 96 |
| Conread position: | 291-453 |
| Cow position: | chr4:32749540-32749388 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 293-428 |
| Cow position: | chr4:63875940-63876074 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 33, 73 |
| Conread position: | 293-433 |
| Cow position: | chr4:45398753-45398610 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 55, 123 |
| Conread position: | 293-452 |
| Cow position: | chr4:27444157-27444009 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.