Cow genome map

Conread name: unkn-MI-P-A1-acn-a-04-1-UM.s1

Conread position: 1-221
Cow position: chr5:5830547-5830767 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 22, 112

Conread position: 3-304
Cow position: chr5:66116916-66117205 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 201
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 170, 31

Conread position: 4-436
Cow position: chr5:35584265-35583837 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 298
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 110, 132

Conread position: 4-444
Cow position: chr5:57964676-57965094 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 314
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 58, 27

Conread position: 6-253
Cow position: chr5:67579684-67579447 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 191
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 105, 17

Conread position: 6-281
Cow position: chr5:54158085-54157813 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 190
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 108, 28

Conread position: 7-417
Cow position: chr5:51953512-51953099 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 28

Conread position: 12-278
Cow position: chr5:20648630-20648890 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 198
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 90, 23

Conread position: 21-279
Cow position: chr5:31551450-31551202 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 192
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 13, 0

Conread position: 22-396
Cow position: chr5:14071961-14072324 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 13

Conread position: 23-353
Cow position: chr5:67463835-67463500 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 159

Conread position: 24-281
Cow position: chr5:33516152-33516416 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 197
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 87, 152

Conread position: 24-351
Cow position: chr5:12329078-12329409 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 254
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 89, 16

Conread position: 24-439
Cow position: chr5:42587286-42587714 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 172

Conread position: 35-278
Cow position: chr5:12581302-12581079 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 188
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 78, 26

Conread position: 35-281
Cow position: chr5:47697779-47698023 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 95

Conread position: 35-313
Cow position: chr5:9025791-9025506 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 69, 141

Conread position: 35-334
Cow position: chr5:15704956-15705253 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 219
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 74, 136

Conread position: 35-346
Cow position: chr5:27679213-27679530 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 140

Conread position: 35-411
Cow position: chr5:56109559-56109926 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 31

Conread position: 35-414
Cow position: chr5:1304618-1305008 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 266
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 77, 104

Conread position: 35-453
Cow position: chr5:37048652-37048261 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 71

Conread position: 36-281
Cow position: chr5:60725870-60725629 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 182
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 77, 126

Conread position: 37-278
Cow position: chr5:15808315-15808550 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 67

Conread position: 37-278
Cow position: chr5:19298868-19299107 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 196
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 39, 128

Conread position: 37-363
Cow position: chr5:71279255-71278929 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 13

Conread position: 39-160
Cow position: chr5:59640179-59640054 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 39-176
Cow position: chr5:57629688-57629828 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 69, 133

Conread position: 39-178
Cow position: chr5:65590502-65590645 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 39-181
Cow position: chr5:62580584-62580438 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 72, 0

Conread position: 39-187
Cow position: chr5:67002046-67001894 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 74, 138

Conread position: 39-233
Cow position: chr5:33443033-33443236 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 63, 136

Conread position: 39-252
Cow position: chr5:37624681-37624468 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 170
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 62, 117

Conread position: 39-268
Cow position: chr5:57490761-57490532 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 156
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 71, 83

Conread position: 39-275
Cow position: chr5:12602498-12602272 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 178
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 74, 131

Conread position: 39-277
Cow position: chr5:70532831-70532577 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 171
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 39-278
Cow position: chr5:29029949-29029709 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 84

Conread position: 39-278
Cow position: chr5:56826649-56826412 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 192
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 66, 44

Conread position: 39-334
Cow position: chr5:11236185-11235880 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 217
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 72, 135

Conread position: 39-346
Cow position: chr5:33570457-33570172 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 231
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 70, 83

Conread position: 39-354
Cow position: chr5:35749142-35748826 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 237
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 74, 85

Conread position: 39-395
Cow position: chr5:39118750-39118428 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 248
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 11, 0

Conread position: 39-412
Cow position: chr5:29431064-29431412 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 259
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 51, 37

Conread position: 39-418
Cow position: chr5:45911708-45912066 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 274
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 75, 28

Conread position: 39-425
Cow position: chr5:38274389-38273990 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 276
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 69, 322

Conread position: 39-438
Cow position: chr5:26098083-26098462 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 280
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 206, 24

Conread position: 39-450
Cow position: chr5:51076018-51076434 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 80

Conread position: 39-452
Cow position: chr5:27493340-27492905 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 33

Conread position: 39-453
Cow position: chr5:21145621-21146028 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 139

Conread position: 40-220
Cow position: chr5:31461813-31461628 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 148
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 73, 140

Conread position: 40-255
Cow position: chr5:9232671-9232875 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 168
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 73, 34

Conread position: 40-413
Cow position: chr5:9585146-9585501 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 275
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 73, 33

Conread position: 40-453
Cow position: chr5:23235065-23234674 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 39

Conread position: 42-235
Cow position: chr5:38911771-38911566 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 72, 0

Conread position: 46-428
Cow position: chr5:7584244-7584617 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 272
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 68, 135

Conread position: 50-278
Cow position: chr5:18379836-18379621 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 171
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 63, 83

Conread position: 51-418
Cow position: chr5:28770848-28770489 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 118

Conread position: 52-344
Cow position: chr5:34482958-34483249 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 125, 41

Conread position: 52-418
Cow position: chr5:15881859-15882228 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 272
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 56, 105

Conread position: 67-350
Cow position: chr5:53921976-53922254 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 51

Conread position: 67-417
Cow position: chr5:63621125-63620784 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 251
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 37, 105

Conread position: 67-438
Cow position: chr5:72755627-72755262 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 261
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 47, 107

Conread position: 67-450
Cow position: chr5:60969017-60968626 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 91

Conread position: 68-233
Cow position: chr5:54761609-54761446 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 132
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 29, 113

Conread position: 68-235
Cow position: chr5:31944169-31944004 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 41, 109

Conread position: 68-277
Cow position: chr5:20717693-20717495 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 107

Conread position: 68-278
Cow position: chr5:1286943-1286731 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 45, 84

Conread position: 74-273
Cow position: chr5:70253238-70253037 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 102, 0

Conread position: 74-416
Cow position: chr5:13575180-13575534 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 102

Conread position: 77-411
Cow position: chr5:56742223-56741892 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 251
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 13, 85

Conread position: 78-274
Cow position: chr5:39206729-39206920 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 94, 0

Conread position: 89-453
Cow position: chr5:57128002-57127651 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 15

Conread position: 149-413
Cow position: chr5:25925379-25925642 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 201
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 92, 29

Conread position: 153-335
Cow position: chr5:26161499-26161691 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 14, 152

Conread position: 167-416
Cow position: chr5:53599575-53599825 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 22

Conread position: 186-417
Cow position: chr5:38970855-38970619 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 168
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 46

Conread position: 187-447
Cow position: chr5:49635124-49635375 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 180
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 53, 9

Conread position: 189-427
Cow position: chr5:55985355-55985600 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 50, 146

Conread position: 196-426
Cow position: chr5:30335924-30336150 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 161
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 86, 154

Conread position: 196-430
Cow position: chr5:21937279-21937504 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 160
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 89, 21

Conread position: 198-433
Cow position: chr5:6149573-6149811 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 175
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 43, 162

Conread position: 211-437
Cow position: chr5:62580241-62580017 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 32, 67

Conread position: 226-429
Cow position: chr5:38911491-38911282 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 13

Conread position: 284-453
Cow position: chr5:20649190-20649360 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 42

Conread position: 293-428
Cow position: chr5:73051473-73051337 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 124, 49

Conread position: 293-448
Cow position: chr5:50156233-50156377 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 294-453
Cow position: chr5:56826143-56825984 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 131
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 122, 64

Conread position: 299-453
Cow position: chr5:10785877-10786024 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 64, 0

Show alignments to all cow chromosomes.