Cow genome map
| Conread name: | unkn-MI-P-A1-acn-a-04-1-UM.s1 |
| Conread position: | 1-157 |
| Cow position: | chr6:30287202-30287046 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 102, 31 |
| Conread position: | 1-261 |
| Cow position: | chr6:14161959-14162209 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 112, 34 |
| Conread position: | 4-273 |
| Cow position: | chr6:34557168-34556902 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 32, 172 |
| Conread position: | 6-417 |
| Cow position: | chr6:6635795-6635389 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 34 |
| Conread position: | 8-452 |
| Cow position: | chr6:29078382-29077950 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 162 |
| Conread position: | 23-170 |
| Cow position: | chr6:54296248-54296099 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 86, 11 |
| Conread position: | 24-357 |
| Cow position: | chr6:35697780-35698121 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 254 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 87, 152 |
| Conread position: | 35-180 |
| Cow position: | chr6:3935999-3936147 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 75, 136 |
| Conread position: | 35-265 |
| Cow position: | chr6:50502217-50501996 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 78, 16 |
| Conread position: | 35-278 |
| Cow position: | chr6:35126487-35126719 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 187 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 76, 138 |
| Conread position: | 35-281 |
| Cow position: | chr6:40241307-40241070 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 78, 45 |
| Conread position: | 35-346 |
| Cow position: | chr6:44389622-44389940 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 124 |
| Conread position: | 39-162 |
| Cow position: | chr6:24337449-24337576 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 39-173 |
| Cow position: | chr6:13092452-13092590 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 39-175 |
| Cow position: | chr6:6244122-6244259 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 39-208 |
| Cow position: | chr6:24260186-24260354 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 39-225 |
| Cow position: | chr6:69273920-69274115 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 39-270 |
| Cow position: | chr6:27711254-27711024 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 14, 43 |
| Conread position: | 39-278 |
| Cow position: | chr6:4665885-4666112 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 59, 67 |
| Conread position: | 39-278 |
| Cow position: | chr6:24496306-24496543 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 74, 137 |
| Conread position: | 39-326 |
| Cow position: | chr6:14280282-14279984 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 137 |
| Conread position: | 39-341 |
| Cow position: | chr6:54930097-54930404 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 74, 31 |
| Conread position: | 39-352 |
| Cow position: | chr6:20332930-20332611 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 45 |
| Conread position: | 39-352 |
| Cow position: | chr6:31687570-31687887 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 134 |
| Conread position: | 39-353 |
| Cow position: | chr6:1076799-1077121 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 71 |
| Conread position: | 39-353 |
| Cow position: | chr6:45692046-45692360 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 72, 42 |
| Conread position: | 39-360 |
| Cow position: | chr6:58593523-58593843 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 74, 134 |
| Conread position: | 39-366 |
| Cow position: | chr6:66677355-66677003 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 125, 141 |
| Conread position: | 39-394 |
| Cow position: | chr6:28086887-28087246 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 80, 135 |
| Conread position: | 39-412 |
| Cow position: | chr6:23892175-23891810 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 72, 118 |
| Conread position: | 39-418 |
| Cow position: | chr6:1939866-1940220 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 71 |
| Conread position: | 39-453 |
| Cow position: | chr6:3018090-3017665 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 28 |
| Conread position: | 40-168 |
| Cow position: | chr6:28008833-28008965 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 40-453 |
| Cow position: | chr6:11159373-11159781 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 108 |
| Conread position: | 40-453 |
| Cow position: | chr6:45616816-45617209 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 298 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 73, 41 |
| Conread position: | 41-233 |
| Cow position: | chr6:20749006-20748816 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 72, 82 |
| Conread position: | 41-422 |
| Cow position: | chr6:5275357-5275750 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 72, 300 |
| Conread position: | 41-422 |
| Cow position: | chr6:41558103-41557719 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 46 |
| Conread position: | 41-422 |
| Cow position: | chr6:53416335-53416716 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 135 |
| Conread position: | 42-264 |
| Cow position: | chr6:62328158-62327943 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 71, 27 |
| Conread position: | 46-293 |
| Cow position: | chr6:55398412-55398176 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 62, 130 |
| Conread position: | 46-432 |
| Cow position: | chr6:6722761-6722372 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 30 |
| Conread position: | 51-419 |
| Cow position: | chr6:62753885-62754244 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 48 |
| Conread position: | 52-417 |
| Cow position: | chr6:66840477-66840109 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 259 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 54-257 |
| Cow position: | chr6:37085500-37085299 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 59, 119 |
| Conread position: | 65-453 |
| Cow position: | chr6:39917762-39917380 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 104 |
| Conread position: | 67-373 |
| Cow position: | chr6:44377866-44377549 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 97 |
| Conread position: | 68-246 |
| Cow position: | chr6:35832146-35831974 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 43, 79 |
| Conread position: | 70-417 |
| Cow position: | chr6:32429023-32428688 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 31 |
| Conread position: | 71-354 |
| Cow position: | chr6:55662325-55662030 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 42, 104 |
| Conread position: | 73-434 |
| Cow position: | chr6:41157809-41157454 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 80-324 |
| Cow position: | chr6:5500481-5500729 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 92 |
| Conread position: | 111-362 |
| Cow position: | chr6:811854-812115 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 132, 63 |
| Conread position: | 114-425 |
| Cow position: | chr6:65227730-65228040 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 129, 56 |
| Conread position: | 122-334 |
| Cow position: | chr6:22098134-22098343 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 118, 62 |
| Conread position: | 122-425 |
| Cow position: | chr6:10484686-10484997 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 75, 60 |
| Conread position: | 122-453 |
| Cow position: | chr6:3373882-3374223 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 52 |
| Conread position: | 149-248 |
| Cow position: | chr6:12808720-12808815 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 87 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 92, 23 |
| Conread position: | 163-428 |
| Cow position: | chr6:29300055-29299790 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 81, 18 |
| Conread position: | 174-413 |
| Cow position: | chr6:55743549-55743308 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 69, 8 |
| Conread position: | 174-451 |
| Cow position: | chr6:69274285-69274562 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 67, 178 |
| Conread position: | 187-425 |
| Cow position: | chr6:1888894-1889142 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 188-425 |
| Cow position: | chr6:12516312-12516073 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 162 |
| Conread position: | 190-426 |
| Cow position: | chr6:46627480-46627239 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 6 |
| Conread position: | 219-407 |
| Cow position: | chr6:6244472-6244661 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 24, 89 |
| Conread position: | 294-418 |
| Cow position: | chr6:40299054-40299172 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
Show alignments to all cow chromosomes.