Cow genome map
| Conread name: | unkn-MI-P-A1-acn-a-04-1-UM.s1 |
| Conread position: | 1-236 |
| Cow position: | chr7:32589475-32589234 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 29, 41 |
| Conread position: | 1-453 |
| Cow position: | chr7:20288601-20289039 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 34 |
| Conread position: | 2-187 |
| Cow position: | chr7:59164967-59164785 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 157, 102 |
| Conread position: | 2-215 |
| Cow position: | chr7:40616155-40615954 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 59 |
| Conread position: | 9-450 |
| Cow position: | chr7:61426228-61425779 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 127 |
| Conread position: | 22-279 |
| Cow position: | chr7:40622816-40622570 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 219, 13 |
| Conread position: | 22-418 |
| Cow position: | chr7:67499334-67498946 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 79, 132 |
| Conread position: | 26-218 |
| Cow position: | chr7:185520-185331 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 88, 150 |
| Conread position: | 26-418 |
| Cow position: | chr7:29377518-29377901 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 35-256 |
| Cow position: | chr7:54060203-54060433 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 78, 93 |
| Conread position: | 35-438 |
| Cow position: | chr7:20104379-20104791 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 143 |
| Conread position: | 38-241 |
| Cow position: | chr7:48413447-48413658 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 75, 187 |
| Conread position: | 38-415 |
| Cow position: | chr7:59845078-59844705 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 282 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 73, 132 |
| Conread position: | 39-197 |
| Cow position: | chr7:8893422-8893584 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 74, 137 |
| Conread position: | 39-273 |
| Cow position: | chr7:65519489-65519740 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 72, 212 |
| Conread position: | 39-278 |
| Cow position: | chr7:59204908-59204659 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 39-278 |
| Cow position: | chr7:68366617-68366862 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 68, 125 |
| Conread position: | 39-328 |
| Cow position: | chr7:46216672-46216377 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 137 |
| Conread position: | 39-351 |
| Cow position: | chr7:12920025-12920337 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 68, 33 |
| Conread position: | 39-361 |
| Cow position: | chr7:43005009-43004668 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 73, 47 |
| Conread position: | 39-413 |
| Cow position: | chr7:11592608-11592962 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 272 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 71, 37 |
| Conread position: | 39-453 |
| Cow position: | chr7:45722341-45721939 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 288 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 155, 56 |
| Conread position: | 40-346 |
| Cow position: | chr7:56664675-56664374 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 201, 64 |
| Conread position: | 40-425 |
| Cow position: | chr7:5247315-5247700 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 275 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 210, 72 |
| Conread position: | 41-246 |
| Cow position: | chr7:43257816-43257618 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 43, 136 |
| Conread position: | 41-273 |
| Cow position: | chr7:56356452-56356680 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 72, 126 |
| Conread position: | 41-421 |
| Cow position: | chr7:62049033-62048658 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 135 |
| Conread position: | 41-453 |
| Cow position: | chr7:62516629-62516232 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 25 |
| Conread position: | 44-418 |
| Cow position: | chr7:42221805-42222176 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 21 |
| Conread position: | 46-418 |
| Cow position: | chr7:45063801-45064172 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 100 |
| Conread position: | 46-436 |
| Cow position: | chr7:52131745-52131348 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 285 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 67-233 |
| Cow position: | chr7:64367293-64367125 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 109 |
| Conread position: | 67-355 |
| Cow position: | chr7:48334902-48335183 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 8, 109 |
| Conread position: | 68-413 |
| Cow position: | chr7:5701520-5701169 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 110 |
| Conread position: | 73-265 |
| Cow position: | chr7:30027732-30027539 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 40, 95 |
| Conread position: | 75-453 |
| Cow position: | chr7:39512025-39512379 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 79-439 |
| Cow position: | chr7:68246898-68246535 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 32, 43 |
| Conread position: | 86-427 |
| Cow position: | chr7:64198305-64198641 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 28, 115 |
| Conread position: | 90-418 |
| Cow position: | chr7:13823360-13823033 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 250 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 23, 43 |
| Conread position: | 90-428 |
| Cow position: | chr7:6532789-6533103 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 92-452 |
| Cow position: | chr7:63328664-63328301 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 59 |
| Conread position: | 131-413 |
| Cow position: | chr7:65952867-65953151 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 95, 35 |
| Conread position: | 141-340 |
| Cow position: | chr7:31441825-31442036 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 144-318 |
| Cow position: | chr7:30642527-30642351 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 97, 30 |
| Conread position: | 180-413 |
| Cow position: | chr7:33339621-33339385 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 180-432 |
| Cow position: | chr7:33062284-33062537 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 89, 57 |
| Conread position: | 181-414 |
| Cow position: | chr7:59164388-59164149 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 18, 139 |
| Conread position: | 196-422 |
| Cow position: | chr7:3626820-3626590 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 8, 162 |
| Conread position: | 197-439 |
| Cow position: | chr7:27709176-27709425 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 45, 160 |
| Conread position: | 312-418 |
| Cow position: | chr7:2967486-2967381 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.