Cow genome map
| Conread name: | unkn-MI-P-A1-acn-a-04-1-UM.s1 |
| Conread position: | 1-324 |
| Cow position: | chr8:49406103-49406413 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 275, 87 |
| Conread position: | 1-414 |
| Cow position: | chr8:22102556-22102989 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 174 |
| Conread position: | 2-271 |
| Cow position: | chr8:26040770-26041021 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 259, 31 |
| Conread position: | 21-409 |
| Cow position: | chr8:5874764-5874372 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 297 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 30, 124 |
| Conread position: | 24-344 |
| Cow position: | chr8:8480040-8480375 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 87, 152 |
| Conread position: | 24-398 |
| Cow position: | chr8:14617289-14617668 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 82 |
| Conread position: | 34-336 |
| Cow position: | chr8:28387179-28387486 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 35-329 |
| Cow position: | chr8:31888226-31887947 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 76, 125 |
| Conread position: | 35-333 |
| Cow position: | chr8:19773067-19772774 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 73, 141 |
| Conread position: | 35-343 |
| Cow position: | chr8:18801829-18801518 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 127 |
| Conread position: | 35-347 |
| Cow position: | chr8:6507677-6508003 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 141 |
| Conread position: | 35-418 |
| Cow position: | chr8:33438393-33438008 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 110 |
| Conread position: | 36-346 |
| Cow position: | chr8:18883423-18883102 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 141 |
| Conread position: | 39-176 |
| Cow position: | chr8:21900261-21900124 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 39-241 |
| Cow position: | chr8:5803776-5803571 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 37, 11 |
| Conread position: | 39-256 |
| Cow position: | chr8:19305633-19305427 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 74, 105 |
| Conread position: | 39-264 |
| Cow position: | chr8:28048956-28049159 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 74, 85 |
| Conread position: | 39-307 |
| Cow position: | chr8:19793128-19793395 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 15 |
| Conread position: | 39-353 |
| Cow position: | chr8:34440053-34439732 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 39-358 |
| Cow position: | chr8:32720502-32720213 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 74, 37 |
| Conread position: | 39-413 |
| Cow position: | chr8:20341096-20341494 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 276 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 91, 244 |
| Conread position: | 39-413 |
| Cow position: | chr8:45685882-45686225 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 26, 73 |
| Conread position: | 39-418 |
| Cow position: | chr8:54159333-54158953 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 108 |
| Conread position: | 39-453 |
| Cow position: | chr8:7103822-7104224 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 127 |
| Conread position: | 40-197 |
| Cow position: | chr8:14702971-14703126 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 73, 109 |
| Conread position: | 40-235 |
| Cow position: | chr8:9986384-9986183 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 62, 136 |
| Conread position: | 40-262 |
| Cow position: | chr8:31185826-31185606 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 70, 23 |
| Conread position: | 40-278 |
| Cow position: | chr8:9672472-9672234 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 74, 84 |
| Conread position: | 40-324 |
| Cow position: | chr8:10167417-10167147 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 68, 117 |
| Conread position: | 40-413 |
| Cow position: | chr8:40432276-40432648 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 135 |
| Conread position: | 40-417 |
| Cow position: | chr8:18725799-18725426 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 136 |
| Conread position: | 40-428 |
| Cow position: | chr8:47129160-47128773 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 136 |
| Conread position: | 40-428 |
| Cow position: | chr8:53942387-53942781 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 190, 50 |
| Conread position: | 40-453 |
| Cow position: | chr8:48681897-48682308 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 144 |
| Conread position: | 41-237 |
| Cow position: | chr8:32960014-32960200 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 135 |
| Conread position: | 41-241 |
| Cow position: | chr8:27369974-27369792 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 41-265 |
| Cow position: | chr8:11794768-11794559 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 54, 133 |
| Conread position: | 41-347 |
| Cow position: | chr8:6763692-6764003 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 41-418 |
| Cow position: | chr8:2975259-2974868 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 67, 120 |
| Conread position: | 41-421 |
| Cow position: | chr8:33818648-33819024 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 97 |
| Conread position: | 42-428 |
| Cow position: | chr8:15870517-15870904 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 68, 120 |
| Conread position: | 46-428 |
| Cow position: | chr8:57404642-57404233 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 73, 58 |
| Conread position: | 51-413 |
| Cow position: | chr8:30021346-30021706 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 55 |
| Conread position: | 52-352 |
| Cow position: | chr8:53359376-53359692 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 59, 52 |
| Conread position: | 52-425 |
| Cow position: | chr8:32327474-32327106 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 59, 130 |
| Conread position: | 53-343 |
| Cow position: | chr8:51877372-51877676 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 55, 127 |
| Conread position: | 58-451 |
| Cow position: | chr8:40273068-40273468 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 5 |
| Conread position: | 59-453 |
| Cow position: | chr8:23440538-23440934 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 120 |
| Conread position: | 64-453 |
| Cow position: | chr8:4336492-4336878 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 68-231 |
| Cow position: | chr8:7102649-7102487 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 125 |
| Conread position: | 71-418 |
| Cow position: | chr8:19368954-19369271 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 40, 85 |
| Conread position: | 74-391 |
| Cow position: | chr8:13630032-13630338 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 41, 85 |
| Conread position: | 75-452 |
| Cow position: | chr8:53892088-53891706 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 103 |
| Conread position: | 89-413 |
| Cow position: | chr8:42151464-42151774 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 87 |
| Conread position: | 99-426 |
| Cow position: | chr8:36687221-36686875 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 44, 54 |
| Conread position: | 111-417 |
| Cow position: | chr8:54828757-54828454 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 12, 7 |
| Conread position: | 122-405 |
| Cow position: | chr8:18810938-18810652 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 72, 83 |
| Conread position: | 122-415 |
| Cow position: | chr8:12790389-12790665 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 121, 52 |
| Conread position: | 157-440 |
| Cow position: | chr8:39097641-39097926 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 174-422 |
| Cow position: | chr8:51633737-51633995 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 14, 187 |
| Conread position: | 174-428 |
| Cow position: | chr8:20671982-20672234 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 11, 132 |
| Conread position: | 187-418 |
| Cow position: | chr8:21945876-21945639 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 187-419 |
| Cow position: | chr8:59472730-59472969 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 54, 14 |
| Conread position: | 189-426 |
| Cow position: | chr8:6586082-6585843 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 196-425 |
| Cow position: | chr8:41411672-41411435 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 134 |
| Conread position: | 197-429 |
| Cow position: | chr8:46714244-46714487 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 46, 215 |
| Conread position: | 252-425 |
| Cow position: | chr8:9986109-9985937 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 18, 115 |
| Conread position: | 293-413 |
| Cow position: | chr8:21078866-21078750 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.