Cow genome map
| Conread name: | unkn-MI-P-A1-acn-a-04-1-UM.s1 |
| Conread position: | 1-421 |
| Cow position: | chr9:1517883-1517477 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 47, 174 |
| Conread position: | 3-422 |
| Cow position: | chr9:34188389-34188795 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 163 |
| Conread position: | 3-423 |
| Cow position: | chr9:5622635-5622199 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 31 |
| Conread position: | 4-453 |
| Cow position: | chr9:12564799-12565229 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 308 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 66, 18 |
| Conread position: | 6-451 |
| Cow position: | chr9:34763450-34763005 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 167 |
| Conread position: | 7-413 |
| Cow position: | chr9:39001192-39001580 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 276, 16 |
| Conread position: | 9-234 |
| Cow position: | chr9:43609104-43609326 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 9-336 |
| Cow position: | chr9:25503089-25502763 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 24-274 |
| Cow position: | chr9:19835963-19835716 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 19, 127 |
| Conread position: | 26-229 |
| Cow position: | chr9:40923224-40923021 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 89, 152 |
| Conread position: | 35-241 |
| Cow position: | chr9:56795280-56795079 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 78, 40 |
| Conread position: | 35-285 |
| Cow position: | chr9:62721402-62721161 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 78, 147 |
| Conread position: | 35-356 |
| Cow position: | chr9:22376699-22377017 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 138 |
| Conread position: | 35-413 |
| Cow position: | chr9:9539011-9539409 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 286 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 35-442 |
| Cow position: | chr9:1527362-1526952 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 105 |
| Conread position: | 39-240 |
| Cow position: | chr9:55203214-55203021 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 74, 133 |
| Conread position: | 39-241 |
| Cow position: | chr9:39994320-39994121 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 74, 133 |
| Conread position: | 39-243 |
| Cow position: | chr9:33326057-33326247 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 69, 119 |
| Conread position: | 39-257 |
| Cow position: | chr9:64606293-64606081 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 69, 26 |
| Conread position: | 39-266 |
| Cow position: | chr9:36587276-36587042 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 57, 27 |
| Conread position: | 39-274 |
| Cow position: | chr9:4915634-4915391 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 80, 65 |
| Conread position: | 39-286 |
| Cow position: | chr9:13071805-13072047 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 74, 97 |
| Conread position: | 39-299 |
| Cow position: | chr9:26585161-26585406 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 111 |
| Conread position: | 39-302 |
| Cow position: | chr9:23294086-23294337 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 74, 135 |
| Conread position: | 39-413 |
| Cow position: | chr9:18570944-18570568 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 137 |
| Conread position: | 39-421 |
| Cow position: | chr9:36508654-36508265 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 75, 48 |
| Conread position: | 39-423 |
| Cow position: | chr9:47200768-47200389 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 213, 71 |
| Conread position: | 39-428 |
| Cow position: | chr9:10003493-10003888 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 74, 83 |
| Conread position: | 39-439 |
| Cow position: | chr9:4834429-4834825 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 39-451 |
| Cow position: | chr9:41318544-41318124 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 28 |
| Conread position: | 39-453 |
| Cow position: | chr9:2638875-2638470 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 39-453 |
| Cow position: | chr9:52725935-52725503 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 88 |
| Conread position: | 40-246 |
| Cow position: | chr9:19119768-19119576 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 40-346 |
| Cow position: | chr9:15855593-15855283 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 122 |
| Conread position: | 40-450 |
| Cow position: | chr9:12183171-12183590 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 24 |
| Conread position: | 41-180 |
| Cow position: | chr9:35794876-35795017 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 67, 127 |
| Conread position: | 41-344 |
| Cow position: | chr9:8234056-8234354 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 230 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 70, 126 |
| Conread position: | 46-173 |
| Cow position: | chr9:34674520-34674645 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 46-365 |
| Cow position: | chr9:38697939-38698259 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 101 |
| Conread position: | 46-453 |
| Cow position: | chr9:12199460-12199047 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 27 |
| Conread position: | 48-419 |
| Cow position: | chr9:7670076-7670441 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 276 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 69, 9 |
| Conread position: | 51-452 |
| Cow position: | chr9:14731795-14732178 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 294 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 52-237 |
| Cow position: | chr9:59113898-59114089 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 9, 131 |
| Conread position: | 52-278 |
| Cow position: | chr9:45140346-45140572 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 22 |
| Conread position: | 54-264 |
| Cow position: | chr9:15282631-15282838 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 45, 34 |
| Conread position: | 54-350 |
| Cow position: | chr9:6557280-6557580 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 60, 109 |
| Conread position: | 66-245 |
| Cow position: | chr9:19082128-19081954 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 67-451 |
| Cow position: | chr9:4985897-4985515 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 97 |
| Conread position: | 68-228 |
| Cow position: | chr9:42366297-42366454 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 45, 51 |
| Conread position: | 68-452 |
| Cow position: | chr9:9077624-9077257 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 42 |
| Conread position: | 79-281 |
| Cow position: | chr9:58125661-58125862 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 39, 101 |
| Conread position: | 89-422 |
| Cow position: | chr9:52766948-52766619 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 68, 19 |
| Conread position: | 112-448 |
| Cow position: | chr9:53597296-53596959 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 249 |
| Conread position: | 121-291 |
| Cow position: | chr9:18566890-18566723 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 120, 53 |
| Conread position: | 136-427 |
| Cow position: | chr9:26198088-26197803 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 105, 38 |
| Conread position: | 143-418 |
| Cow position: | chr9:35527262-35527538 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 31 |
| Conread position: | 155-363 |
| Cow position: | chr9:46658085-46657870 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 88, 19 |
| Conread position: | 178-325 |
| Cow position: | chr9:51269456-51269606 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 95 |
| Conread position: | 192-452 |
| Cow position: | chr9:1281518-1281254 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 243-413 |
| Cow position: | chr9:39993971-39993794 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 115 |
| Conread position: | 277-417 |
| Cow position: | chr9:4915149-4915012 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 56 |
Show alignments to all cow chromosomes.