Cow genome map
| Conread name: | unkn-MI-P-A1-acn-a-04-1-UM.s1 |
| Conread position: | 1-222 |
| Cow position: | chrX:7022740-7022533 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 21 |
| Conread position: | 1-275 |
| Cow position: | chrX:6672428-6672156 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 33 |
| Conread position: | 1-340 |
| Cow position: | chrX:32456412-32456097 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 259, 33 |
| Conread position: | 1-453 |
| Cow position: | chrX:20505359-20504911 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 60 |
| Conread position: | 2-278 |
| Cow position: | chrX:1330146-1330419 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 26, 176 |
| Conread position: | 4-346 |
| Cow position: | chrX:4440499-4440155 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 71 |
| Conread position: | 5-173 |
| Cow position: | chrX:30729143-30729308 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 103, 29 |
| Conread position: | 5-256 |
| Cow position: | chrX:18518683-18518438 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 108, 171 |
| Conread position: | 5-413 |
| Cow position: | chrX:40353955-40353545 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 53 |
| Conread position: | 5-418 |
| Cow position: | chrX:11675721-11675304 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 29 |
| Conread position: | 6-413 |
| Cow position: | chrX:2186900-2186498 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 26 |
| Conread position: | 7-413 |
| Cow position: | chrX:4590590-4590190 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 26 |
| Conread position: | 8-235 |
| Cow position: | chrX:40350543-40350322 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 28, 100 |
| Conread position: | 9-413 |
| Cow position: | chrX:16817282-16816908 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 11-418 |
| Cow position: | chrX:6472353-6471939 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 113 |
| Conread position: | 24-273 |
| Cow position: | chrX:5956711-5956952 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 79, 46 |
| Conread position: | 33-422 |
| Cow position: | chrX:957109-956712 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 37 |
| Conread position: | 35-270 |
| Cow position: | chrX:4019304-4019545 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 76, 194 |
| Conread position: | 35-356 |
| Cow position: | chrX:13403132-13403457 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 35-413 |
| Cow position: | chrX:18814793-18814408 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 148 |
| Conread position: | 39-173 |
| Cow position: | chrX:502950-503088 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 39-180 |
| Cow position: | chrX:19391661-19391804 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 136 |
| Conread position: | 39-184 |
| Cow position: | chrX:24286669-24286525 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 39-233 |
| Cow position: | chrX:1427887-1427692 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 75, 54 |
| Conread position: | 39-241 |
| Cow position: | chrX:11851162-11851352 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 39-259 |
| Cow position: | chrX:35552952-35552743 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 72, 39 |
| Conread position: | 39-281 |
| Cow position: | chrX:37749270-37749024 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 74, 143 |
| Conread position: | 39-345 |
| Cow position: | chrX:40698834-40698541 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 201, 88 |
| Conread position: | 39-353 |
| Cow position: | chrX:4601042-4601350 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 243, 31 |
| Conread position: | 39-364 |
| Cow position: | chrX:37236615-37236297 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 118 |
| Conread position: | 39-413 |
| Cow position: | chrX:10534693-10534318 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 94, 77 |
| Conread position: | 39-413 |
| Cow position: | chrX:25453785-25453420 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 129 |
| Conread position: | 39-414 |
| Cow position: | chrX:24201770-24201416 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 72 |
| Conread position: | 39-415 |
| Cow position: | chrX:4625526-4625141 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 138 |
| Conread position: | 39-417 |
| Cow position: | chrX:21816879-21816500 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 129 |
| Conread position: | 39-418 |
| Cow position: | chrX:9910145-9910510 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 125 |
| Conread position: | 39-428 |
| Cow position: | chrX:11983197-11982825 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 51 |
| Conread position: | 39-429 |
| Cow position: | chrX:37137658-37138053 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 39-431 |
| Cow position: | chrX:5675421-5675793 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 199, 39 |
| Conread position: | 39-440 |
| Cow position: | chrX:37980996-37980602 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 299 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 36, 137 |
| Conread position: | 39-452 |
| Cow position: | chrX:23253604-23253987 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 44 |
| Conread position: | 39-453 |
| Cow position: | chrX:27458125-27458523 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 35 |
| Conread position: | 40-186 |
| Cow position: | chrX:25653697-25653547 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 40-231 |
| Cow position: | chrX:30785167-30784978 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 68, 37 |
| Conread position: | 40-352 |
| Cow position: | chrX:4630764-4631083 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 135 |
| Conread position: | 40-413 |
| Cow position: | chrX:12688464-12688839 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 11 |
| Conread position: | 40-416 |
| Cow position: | chrX:18699747-18700126 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 135 |
| Conread position: | 40-426 |
| Cow position: | chrX:32546504-32546117 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 140, 32 |
| Conread position: | 40-427 |
| Cow position: | chrX:24886183-24886562 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 74, 132 |
| Conread position: | 40-453 |
| Cow position: | chrX:19127031-19127429 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 47 |
| Conread position: | 42-413 |
| Cow position: | chrX:37957174-37956809 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 135 |
| Conread position: | 42-453 |
| Cow position: | chrX:19017627-19018050 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 18 |
| Conread position: | 46-336 |
| Cow position: | chrX:2147915-2147626 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 126 |
| Conread position: | 51-259 |
| Cow position: | chrX:44248639-44248838 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 35 |
| Conread position: | 54-413 |
| Cow position: | chrX:21885501-21885874 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 315 |
| Conread position: | 64-422 |
| Cow position: | chrX:25921215-25921553 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 70-429 |
| Cow position: | chrX:18468040-18467678 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 174, 34 |
| Conread position: | 74-454 |
| Cow position: | chrX:43647181-43647554 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 32 |
| Conread position: | 89-345 |
| Cow position: | chrX:4947935-4948178 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 93-418 |
| Cow position: | chrX:28939334-28939032 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 148, 11 |
| Conread position: | 97-429 |
| Cow position: | chrX:2700556-2700883 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 124, 16 |
| Conread position: | 121-453 |
| Cow position: | chrX:4597184-4597518 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 14 |
| Conread position: | 134-453 |
| Cow position: | chrX:24951855-24952161 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 55 |
| Conread position: | 135-426 |
| Cow position: | chrX:41660671-41660389 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 74, 26 |
| Conread position: | 136-418 |
| Cow position: | chrX:25106738-25106449 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 41 |
| Conread position: | 156-351 |
| Cow position: | chrX:39190735-39190944 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 172-422 |
| Cow position: | chrX:37067506-37067250 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 71, 19 |
| Conread position: | 174-444 |
| Cow position: | chrX:43195937-43195664 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 22 |
| Conread position: | 178-418 |
| Cow position: | chrX:8557992-8558225 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 65, 11 |
| Conread position: | 178-418 |
| Cow position: | chrX:37364894-37364650 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 11 |
| Conread position: | 185-425 |
| Cow position: | chrX:13061013-13060763 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 98, 49 |
| Conread position: | 187-427 |
| Cow position: | chrX:10704448-10704201 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 84, 45 |
| Conread position: | 190-410 |
| Cow position: | chrX:4794031-4794251 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 51, 117 |
| Conread position: | 196-422 |
| Cow position: | chrX:34865699-34865935 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 158 |
| Conread position: | 197-418 |
| Cow position: | chrX:24194245-24194019 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 223-373 |
| Cow position: | chrX:25653544-25653384 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 57, 16 |
| Conread position: | 278-451 |
| Cow position: | chrX:19216945-19217111 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 74 |
Show alignments to all cow chromosomes.