Cow genome map
| Conread name: | unkn-MI-P-A1-acn-g-07-1-UM.s1 |
| Conread position: | 190-505 |
| Cow position: | chrX:10417275-10416957 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 26 |
| Conread position: | 221-505 |
| Cow position: | chrX:17667840-17667557 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 226-505 |
| Cow position: | chrX:26427584-26427305 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 130, 244 |
| Conread position: | 227-505 |
| Cow position: | chrX:28562160-28561880 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 20, 73 |
| Conread position: | 248-505 |
| Cow position: | chrX:2562779-2562522 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 248-505 |
| Cow position: | chrX:2604126-2604383 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 248-505 |
| Cow position: | chrX:13398042-13397785 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 248-505 |
| Cow position: | chrX:16363046-16362789 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 46 |
| Conread position: | 248-505 |
| Cow position: | chrX:27426242-27425985 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 248-505 |
| Cow position: | chrX:31493498-31493755 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 248-505 |
| Cow position: | chrX:39563853-39563596 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 40, 46 |
| Conread position: | 275-505 |
| Cow position: | chrX:2101964-2102193 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 275-505 |
| Cow position: | chrX:5336381-5336151 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 275-505 |
| Cow position: | chrX:5863503-5863732 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 13, 18 |
| Conread position: | 275-505 |
| Cow position: | chrX:6872968-6872738 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 275-505 |
| Cow position: | chrX:7030291-7030519 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 275-505 |
| Cow position: | chrX:7093703-7093933 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 275-505 |
| Cow position: | chrX:7481737-7481967 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 275-505 |
| Cow position: | chrX:8479754-8479985 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 275-505 |
| Cow position: | chrX:10531453-10531223 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 275-505 |
| Cow position: | chrX:12343061-12343289 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 275-505 |
| Cow position: | chrX:13076592-13076362 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 275-505 |
| Cow position: | chrX:13097166-13096936 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 275-505 |
| Cow position: | chrX:14594876-14595106 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 275-505 |
| Cow position: | chrX:15179326-15179090 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 106, 21 |
| Conread position: | 275-505 |
| Cow position: | chrX:18219502-18219732 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 275-505 |
| Cow position: | chrX:20359946-20359716 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 275-505 |
| Cow position: | chrX:21490302-21490532 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 275-505 |
| Cow position: | chrX:22611052-22611281 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 275-505 |
| Cow position: | chrX:30055630-30055400 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 275-505 |
| Cow position: | chrX:32067051-32066827 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 275-505 |
| Cow position: | chrX:35529967-35530197 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 276-505 |
| Cow position: | chrX:7752006-7752234 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 276-505 |
| Cow position: | chrX:8588284-8588513 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 276-505 |
| Cow position: | chrX:37812267-37812496 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 292-505 |
| Cow position: | chrX:16237905-16238118 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 173, 160 |
| Conread position: | 296-505 |
| Cow position: | chrX:3421059-3420854 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 296-505 |
| Cow position: | chrX:5833305-5833096 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 296-505 |
| Cow position: | chrX:9008464-9008673 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 296-505 |
| Cow position: | chrX:15980824-15980615 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 296-505 |
| Cow position: | chrX:18659656-18659447 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 296-505 |
| Cow position: | chrX:22619182-22618973 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 312-505 |
| Cow position: | chrX:1942600-1942410 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 315-504 |
| Cow position: | chrX:507186-506997 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 336-505 |
| Cow position: | chrX:34553296-34553461 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 340-505 |
| Cow position: | chrX:28871007-28870842 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 366-505 |
| Cow position: | chrX:982858-982997 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.