Cow genome map
| Conread name: | unkn-MI-P-A3-abw-f-04-1-UM.s1 |
| Conread position: | 10-201 |
| Cow position: | chr1:30065667-30065864 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 106 |
| Conread position: | 18-210 |
| Cow position: | chr1:42888186-42887996 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 119, 45 |
| Conread position: | 19-141 |
| Cow position: | chr1:34684784-34684912 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 19-161 |
| Cow position: | chr1:54295844-54295699 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 74 |
| Conread position: | 19-210 |
| Cow position: | chr1:56475298-56475494 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 86 |
| Conread position: | 19-210 |
| Cow position: | chr1:85773504-85773704 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 19-222 |
| Cow position: | chr1:13718538-13718328 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 45, 12 |
| Conread position: | 19-242 |
| Cow position: | chr1:51967547-51967775 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 47, 118 |
| Conread position: | 19-256 |
| Cow position: | chr1:53649950-53650195 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 47, 213 |
| Conread position: | 19-274 |
| Cow position: | chr1:54477091-54477357 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 69, 41 |
| Conread position: | 19-275 |
| Cow position: | chr1:37323975-37323730 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 38, 107 |
| Conread position: | 19-275 |
| Cow position: | chr1:55145343-55145613 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 19-275 |
| Cow position: | chr1:68950705-68950954 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 47, 98 |
| Conread position: | 19-275 |
| Cow position: | chr1:71044805-71045056 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 47, 117 |
| Conread position: | 19-275 |
| Cow position: | chr1:99117313-99117566 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 43, 121 |
| Conread position: | 23-138 |
| Cow position: | chr1:81357354-81357230 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 24-210 |
| Cow position: | chr1:24781177-24780983 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 42, 169 |
| Conread position: | 24-210 |
| Cow position: | chr1:44127538-44127344 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 157 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 42, 119 |
| Conread position: | 24-210 |
| Cow position: | chr1:68818606-68818413 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 42, 172 |
| Conread position: | 24-210 |
| Cow position: | chr1:68846407-68846220 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 159 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 42, 105 |
| Conread position: | 24-210 |
| Cow position: | chr1:85338174-85338359 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 24-244 |
| Cow position: | chr1:24580709-24580938 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 24-253 |
| Cow position: | chr1:92196280-92196512 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 40, 206 |
| Conread position: | 24-261 |
| Cow position: | chr1:53397007-53397237 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 42, 110 |
| Conread position: | 24-275 |
| Cow position: | chr1:42875353-42875108 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 37, 104 |
| Conread position: | 24-275 |
| Cow position: | chr1:100536451-100536710 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 42, 220 |
| Conread position: | 24-275 |
| Cow position: | chr1:102783840-102784079 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 42, 84 |
| Conread position: | 25-275 |
| Cow position: | chr1:58439995-58439747 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 197 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 41, 187 |
| Conread position: | 28-212 |
| Cow position: | chr1:19483936-19483746 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 28-238 |
| Cow position: | chr1:99106110-99105891 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 38, 105 |
| Conread position: | 28-267 |
| Cow position: | chr1:44079112-44078877 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 38, 142 |
| Conread position: | 28-275 |
| Cow position: | chr1:61563344-61563601 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 34-208 |
| Cow position: | chr1:26446467-26446653 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 38-275 |
| Cow position: | chr1:24922191-24921962 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 28, 123 |
| Conread position: | 42-204 |
| Cow position: | chr1:40061544-40061713 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 24, 150 |
| Conread position: | 43-275 |
| Cow position: | chr1:68854277-68854503 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 23, 94 |
| Conread position: | 53-275 |
| Cow position: | chr1:61220771-61220983 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 85, 31 |
| Conread position: | 54-268 |
| Cow position: | chr1:100591434-100591228 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 157 |
| Conread position: | 54-271 |
| Cow position: | chr1:14240728-14240519 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 157 |
| Conread position: | 54-271 |
| Cow position: | chr1:57571171-57571380 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 17, 157 |
| Conread position: | 54-271 |
| Cow position: | chr1:63048918-63049126 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 16, 152 |
| Conread position: | 54-271 |
| Cow position: | chr1:76618135-76617927 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 16, 156 |
| Conread position: | 54-271 |
| Cow position: | chr1:79453421-79453212 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 12, 157 |
| Conread position: | 54-272 |
| Cow position: | chr1:30531684-30531474 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 56-271 |
| Cow position: | chr1:81302460-81302682 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 145, 65 |
| Conread position: | 56-275 |
| Cow position: | chr1:58528615-58528823 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 57-271 |
| Cow position: | chr1:63602443-63602240 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 57-271 |
| Cow position: | chr1:90913174-90913377 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 63-271 |
| Cow position: | chr1:25553155-25553351 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 63-271 |
| Cow position: | chr1:100888157-100887960 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 63-274 |
| Cow position: | chr1:61203735-61203935 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 64-271 |
| Cow position: | chr1:97076149-97075953 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 69-271 |
| Cow position: | chr1:30372250-30372442 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 140 |
| Conread position: | 85-271 |
| Cow position: | chr1:38478984-38479159 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 113-273 |
| Cow position: | chr1:85163916-85163766 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 97 |
| Conread position: | 115-275 |
| Cow position: | chr1:44229618-44229767 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
Show alignments to all cow chromosomes.