Cow genome map
| Conread name: | unkn-MI-P-A3-abw-f-04-1-UM.s1 |
| Conread position: | 19-199 |
| Cow position: | chr5:71738193-71738381 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 47, 79 |
| Conread position: | 19-210 |
| Cow position: | chr5:6044083-6044279 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 19-210 |
| Cow position: | chr5:34670008-34669808 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 161 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 19-210 |
| Cow position: | chr5:40791917-40792113 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 19-210 |
| Cow position: | chr5:43991363-43991563 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 19-213 |
| Cow position: | chr5:41548464-41548266 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 47, 116 |
| Conread position: | 19-234 |
| Cow position: | chr5:26466719-26466926 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 19-239 |
| Cow position: | chr5:62377447-62377675 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 51, 106 |
| Conread position: | 19-261 |
| Cow position: | chr5:18491487-18491737 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 49, 198 |
| Conread position: | 19-269 |
| Cow position: | chr5:58353299-58353534 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 19-271 |
| Cow position: | chr5:62159844-62159591 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 47, 144 |
| Conread position: | 19-274 |
| Cow position: | chr5:5682430-5682171 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 33, 199 |
| Conread position: | 19-275 |
| Cow position: | chr5:12558500-12558242 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 47, 198 |
| Conread position: | 19-275 |
| Cow position: | chr5:33775693-33775449 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 23-213 |
| Cow position: | chr5:40928936-40928742 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 23-246 |
| Cow position: | chr5:15362129-15362366 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 23-275 |
| Cow position: | chr5:21827905-21828166 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 43, 77 |
| Conread position: | 23-275 |
| Cow position: | chr5:42743877-42744125 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 43, 117 |
| Conread position: | 24-204 |
| Cow position: | chr5:33536702-33536886 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 42, 112 |
| Conread position: | 24-210 |
| Cow position: | chr5:54721743-54721933 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 42, 98 |
| Conread position: | 24-224 |
| Cow position: | chr5:19969946-19969747 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 24-233 |
| Cow position: | chr5:72046577-72046360 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 42, 105 |
| Conread position: | 24-244 |
| Cow position: | chr5:53834738-53834964 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 42, 191 |
| Conread position: | 24-253 |
| Cow position: | chr5:6671083-6670859 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 115 |
| Conread position: | 28-275 |
| Cow position: | chr5:15723226-15722977 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 197 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 38, 204 |
| Conread position: | 30-269 |
| Cow position: | chr5:34299974-34300211 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 36, 72 |
| Conread position: | 34-261 |
| Cow position: | chr5:30301948-30302177 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 32, 98 |
| Conread position: | 54-269 |
| Cow position: | chr5:47342995-47343202 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 17, 161 |
| Conread position: | 54-271 |
| Cow position: | chr5:1338799-1338590 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 12, 157 |
| Conread position: | 54-271 |
| Cow position: | chr5:3501006-3500797 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 12, 157 |
| Conread position: | 54-271 |
| Cow position: | chr5:14636456-14636248 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 17, 156 |
| Conread position: | 54-271 |
| Cow position: | chr5:29742439-29742230 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 12, 157 |
| Conread position: | 54-271 |
| Cow position: | chr5:43984206-43984415 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 17, 157 |
| Conread position: | 56-271 |
| Cow position: | chr5:46676740-46676944 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 57-271 |
| Cow position: | chr5:3789353-3789554 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 81, 5 |
| Conread position: | 63-271 |
| Cow position: | chr5:21189355-21189549 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 63-271 |
| Cow position: | chr5:54785974-54785777 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 63-271 |
| Cow position: | chr5:73485752-73485555 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 69-275 |
| Cow position: | chr5:36724584-36724393 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
Show alignments to all cow chromosomes.