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Cow genome map

           
Conread name:
           
unkn-MI-P-A3-ade-a-01-1-UM.s1
        

               
Conread position:
               
18-158
               

               
Cow position:
               
chr29:17668419-17668565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
36, 62
               

               
Conread position:
               
18-250
               

               
Cow position:
               
chr29:32656361-32656596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 183
               

               
Conread position:
               
18-262
               

               
Cow position:
               
chr29:1325370-1325609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 66
               

               
Conread position:
               
18-284
               

               
Cow position:
               
chr29:25737488-25737217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
42, 184
               

               
Conread position:
               
18-290
               

               
Cow position:
               
chr29:45005701-45005425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 185
               

               
Conread position:
               
18-291
               

               
Cow position:
               
chr29:30188409-30188121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 64
               

               
Conread position:
               
18-306
               

               
Cow position:
               
chr29:11915750-11916044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
36, 69
               

               
Conread position:
               
18-314
               

               
Cow position:
               
chr29:109627-109902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
19-122
               

               
Cow position:
               
chr29:12004830-12004727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
53, 60
               

               
Conread position:
               
19-144
               

               
Cow position:
               
chr29:13486880-13487015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 63
               

               
Conread position:
               
19-164
               

               
Cow position:
               
chr29:868706-868859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
32, 66
               

               
Conread position:
               
19-165
               

               
Cow position:
               
chr29:26319106-26319250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
90, 37
               

               
Conread position:
               
19-173
               

               
Cow position:
               
chr29:15940703-15940537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
19-179
               

               
Cow position:
               
chr29:10235202-10235035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
19-180
               

               
Cow position:
               
chr29:2984819-2984990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
19-185
               

               
Cow position:
               
chr29:4194186-4194023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
41, 29
               

               
Conread position:
               
19-187
               

               
Cow position:
               
chr29:26654109-26653937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
91, 41
               

               
Conread position:
               
19-188
               

               
Cow position:
               
chr29:6286227-6286053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
53, 42
               

               
Conread position:
               
19-188
               

               
Cow position:
               
chr29:27873535-27873709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
19-190
               

               
Cow position:
               
chr29:12626048-12625866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
19-194
               

               
Cow position:
               
chr29:4085250-4085423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
19-194
               

               
Cow position:
               
chr29:5210417-5210606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
29, 65
               

               
Conread position:
               
19-194
               

               
Cow position:
               
chr29:9912103-9912289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 160
               

               
Conread position:
               
19-194
               

               
Cow position:
               
chr29:28166284-28166107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
101, 52
               

               
Conread position:
               
19-200
               

               
Cow position:
               
chr29:94623-94447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
37, 54
               

               
Conread position:
               
19-212
               

               
Cow position:
               
chr29:11705054-11705240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
19-214
               

               
Cow position:
               
chr29:26416282-26416484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
35, 64
               

               
Conread position:
               
19-217
               

               
Cow position:
               
chr29:26559311-26559108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
49, 60
               

               
Conread position:
               
19-218
               

               
Cow position:
               
chr29:40852860-40853063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 29
               

               
Conread position:
               
19-222
               

               
Cow position:
               
chr29:6293543-6293335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
82, 45
               

               
Conread position:
               
19-224
               

               
Cow position:
               
chr29:847710-847499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
19-227
               

               
Cow position:
               
chr29:31813879-31814089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
19-228
               

               
Cow position:
               
chr29:28195582-28195373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
53, 41
               

               
Conread position:
               
19-234
               

               
Cow position:
               
chr29:11053928-11053704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 61
               

               
Conread position:
               
19-249
               

               
Cow position:
               
chr29:40633577-40633812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
84, 29
               

               
Conread position:
               
19-249
               

               
Cow position:
               
chr29:41530778-41531010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
33, 159
               

               
Conread position:
               
19-250
               

               
Cow position:
               
chr29:26017571-26017340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
19-251
               

               
Cow position:
               
chr29:42771580-42771814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
19-258
               

               
Cow position:
               
chr29:26330138-26330389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 57
               

               
Conread position:
               
19-266
               

               
Cow position:
               
chr29:13639439-13639184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
19-275
               

               
Cow position:
               
chr29:6844697-6844416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
72, 16
               

               
Conread position:
               
19-279
               

               
Cow position:
               
chr29:707020-706777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
37, 68
               

               
Conread position:
               
19-281
               

               
Cow position:
               
chr29:22162322-22162049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 202
               

               
Conread position:
               
19-282
               

               
Cow position:
               
chr29:6337592-6337851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
33, 108
               

               
Conread position:
               
19-282
               

               
Cow position:
               
chr29:19428590-19428851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
38, 61
               

               
Conread position:
               
19-282
               

               
Cow position:
               
chr29:40583724-40583986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 159
               

               
Conread position:
               
19-284
               

               
Cow position:
               
chr29:749979-749688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
27, 64
               

               
Conread position:
               
19-284
               

               
Cow position:
               
chr29:8926534-8926247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
23, 65
               

               
Conread position:
               
19-284
               

               
Cow position:
               
chr29:13028368-13028653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 62
               

               
Conread position:
               
19-284
               

               
Cow position:
               
chr29:19762201-19762466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
38, 67
               

               
Conread position:
               
19-284
               

               
Cow position:
               
chr29:22175618-22175894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
106, 35
               

               
Conread position:
               
19-285
               

               
Cow position:
               
chr29:19250279-19250547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
19-285
               

               
Cow position:
               
chr29:30367127-30366851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
29, 104
               

               
Conread position:
               
19-286
               

               
Cow position:
               
chr29:29769420-29769150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
40, 61
               

               
Conread position:
               
19-287
               

               
Cow position:
               
chr29:22778246-22777975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
19-289
               

               
Cow position:
               
chr29:1022226-1022501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
35, 171
               

               
Conread position:
               
19-294
               

               
Cow position:
               
chr29:12025539-12025265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
35, 114
               

               
Conread position:
               
19-294
               

               
Cow position:
               
chr29:20770274-20770556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 228
               

               
Conread position:
               
19-296
               

               
Cow position:
               
chr29:23825599-23825878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 61
               

               
Conread position:
               
19-296
               

               
Cow position:
               
chr29:32963487-32963736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
233, 35
               

               
Conread position:
               
19-298
               

               
Cow position:
               
chr29:9709626-9709909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
73, 179
               

               
Conread position:
               
19-298
               

               
Cow position:
               
chr29:12680089-12680374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
19-299
               

               
Cow position:
               
chr29:13373230-13373536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
53, 35
               

               
Conread position:
               
19-304
               

               
Cow position:
               
chr29:32799777-32799480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
19-307
               

               
Cow position:
               
chr29:4520266-4520557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
35, 106
               

               
Conread position:
               
19-308
               

               
Cow position:
               
chr29:11397993-11397692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
46, 35
               

               
Conread position:
               
19-322
               

               
Cow position:
               
chr29:8004992-8004678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
43, 73
               

               
Conread position:
               
20-182
               

               
Cow position:
               
chr29:32290540-32290711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
34, 59
               

               
Conread position:
               
20-188
               

               
Cow position:
               
chr29:10653273-10653440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
45, 59
               

               
Conread position:
               
20-194
               

               
Cow position:
               
chr29:25333532-25333346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
20-195
               

               
Cow position:
               
chr29:356251-356438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
20-250
               

               
Cow position:
               
chr29:29324482-29324260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
52, 26
               

               
Conread position:
               
20-275
               

               
Cow position:
               
chr29:34745729-34745467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
27, 63
               

               
Conread position:
               
20-282
               

               
Cow position:
               
chr29:24624178-24624442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
31, 62
               

               
Conread position:
               
20-283
               

               
Cow position:
               
chr29:12784024-12783758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
63, 34
               

               
Conread position:
               
20-290
               

               
Cow position:
               
chr29:21645256-21645525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 28
               

               
Conread position:
               
20-295
               

               
Cow position:
               
chr29:22519198-22518907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
20-304
               

               
Cow position:
               
chr29:4120780-4121074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
34, 199
               

               
Conread position:
               
20-304
               

               
Cow position:
               
chr29:11434054-11434337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
89, 43
               

               
Conread position:
               
20-318
               

               
Cow position:
               
chr29:40994958-40994647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
34, 217
               

               
Conread position:
               
21-188
               

               
Cow position:
               
chr29:6015055-6015234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
21-188
               

               
Cow position:
               
chr29:13372598-13372771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 57
               

               
Conread position:
               
21-191
               

               
Cow position:
               
chr29:19821220-19821395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
102, 33
               

               
Conread position:
               
21-192
               

               
Cow position:
               
chr29:39567620-39567794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
21-193
               

               
Cow position:
               
chr29:11647022-11647207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
41, 69
               

               
Conread position:
               
21-197
               

               
Cow position:
               
chr29:17409268-17409453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
21-250
               

               
Cow position:
               
chr29:87083-86844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
21-250
               

               
Cow position:
               
chr29:22068813-22068581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
33, 65
               

               
Conread position:
               
21-250
               

               
Cow position:
               
chr29:22936203-22936446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
36, 61
               

               
Conread position:
               
21-251
               

               
Cow position:
               
chr29:17222346-17222577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
33, 54
               

               
Conread position:
               
21-271
               

               
Cow position:
               
chr29:21443408-21443151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
36, 181
               

               
Conread position:
               
21-280
               

               
Cow position:
               
chr29:2055991-2056259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 200
               

               
Conread position:
               
21-285
               

               
Cow position:
               
chr29:38580910-38581196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
45, 61
               

               
Conread position:
               
21-288
               

               
Cow position:
               
chr29:36220459-36220751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
25, 62
               

               
Conread position:
               
21-290
               

               
Cow position:
               
chr29:23389623-23389357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 57
               

               
Conread position:
               
21-291
               

               
Cow position:
               
chr29:20167355-20167632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
40, 61
               

               
Conread position:
               
21-291
               

               
Cow position:
               
chr29:31489254-31489532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
61, 35
               

               
Conread position:
               
21-291
               

               
Cow position:
               
chr29:32894201-32894470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 26
               

               
Conread position:
               
21-294
               

               
Cow position:
               
chr29:5409207-5408930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
38, 14
               

               
Conread position:
               
21-294
               

               
Cow position:
               
chr29:18450202-18449925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
38, 50
               

               
Conread position:
               
21-295
               

               
Cow position:
               
chr29:21196719-21196441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
21-296
               

               
Cow position:
               
chr29:5046585-5046865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
34, 175
               

               
Conread position:
               
21-298
               

               
Cow position:
               
chr29:30227340-30227064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
91, 33
               

               
Conread position:
               
21-299
               

               
Cow position:
               
chr29:16195775-16196074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 24
               

               
Conread position:
               
21-300
               

               
Cow position:
               
chr29:23813105-23812829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
88, 158
               

               
Conread position:
               
21-314
               

               
Cow position:
               
chr29:24292803-24293100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
51, 42
               

               
Conread position:
               
22-176
               

               
Cow position:
               
chr29:30351001-30350835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
22-250
               

               
Cow position:
               
chr29:24952622-24952847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 32
               

               
Conread position:
               
22-250
               

               
Cow position:
               
chr29:29057113-29057336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
30, 52
               

               
Conread position:
               
22-282
               

               
Cow position:
               
chr29:40299080-40298795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
22-288
               

               
Cow position:
               
chr29:17297068-17297344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
22-329
               

               
Cow position:
               
chr29:27858726-27859038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
32, 84
               

               
Conread position:
               
23-165
               

               
Cow position:
               
chr29:41365047-41365194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
49, 54
               

               
Conread position:
               
23-248
               

               
Cow position:
               
chr29:2263062-2262823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
19, 56
               

               
Conread position:
               
23-250
               

               
Cow position:
               
chr29:8669300-8669515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
34, 58
               

               
Conread position:
               
23-250
               

               
Cow position:
               
chr29:40096898-40097141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
28, 221
               

               
Conread position:
               
23-281
               

               
Cow position:
               
chr29:27668728-27668454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 61
               

               
Conread position:
               
24-195
               

               
Cow position:
               
chr29:13867276-13867094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 53
               

               
Conread position:
               
24-250
               

               
Cow position:
               
chr29:30440867-30441099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
24-294
               

               
Cow position:
               
chr29:4334662-4334941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 98
               

               
Conread position:
               
24-296
               

               
Cow position:
               
chr29:31928921-31929200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
28, 60
               

               
Conread position:
               
24-304
               

               
Cow position:
               
chr29:37618237-37618534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
30, 60
               

               
Conread position:
               
24-327
               

               
Cow position:
               
chr29:34744686-34744382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
30, 58
               

               
Conread position:
               
25-221
               

               
Cow position:
               
chr29:24252174-24252379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 76
               

               
Conread position:
               
25-273
               

               
Cow position:
               
chr29:1011637-1011401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
227, 29
               

               
Conread position:
               
25-278
               

               
Cow position:
               
chr29:40959911-40959646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
28, 39
               

               
Conread position:
               
25-279
               

               
Cow position:
               
chr29:28775523-28775278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
29, 169
               

               
Conread position:
               
25-291
               

               
Cow position:
               
chr29:23697916-23698180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
52, 39
               

               
Conread position:
               
25-298
               

               
Cow position:
               
chr29:5995164-5994872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
28, 62
               

               
Conread position:
               
25-298
               

               
Cow position:
               
chr29:44378478-44378192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
37, 56
               

               
Conread position:
               
25-333
               

               
Cow position:
               
chr29:42630058-42630374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
32, 55
               

               
Conread position:
               
26-282
               

               
Cow position:
               
chr29:501137-501401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
24, 38
               

               
Conread position:
               
29-188
               

               
Cow position:
               
chr29:1229546-1229715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
30, 49
               

               
Conread position:
               
29-223
               

               
Cow position:
               
chr29:25088691-25088884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
29-285
               

               
Cow position:
               
chr29:43544661-43544406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
23, 51
               

               
Conread position:
               
35-274
               

               
Cow position:
               
chr29:11696660-11696885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 85
               

               
Conread position:
               
36-250
               

               
Cow position:
               
chr29:15947115-15947329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
18, 39
               

               
Conread position:
               
39-291
               

               
Cow position:
               
chr29:35258934-35259191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 161
               

               
Conread position:
               
44-188
               

               
Cow position:
               
chr29:31981788-31981939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 35
               

               
Conread position:
               
44-305
               

               
Cow position:
               
chr29:1933616-1933346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
17, 195
               

               
Conread position:
               
46-195
               

               
Cow position:
               
chr29:10156342-10156190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
56, 100
               

               
Conread position:
               
46-250
               

               
Cow position:
               
chr29:34359018-34358817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 32
               

               
Conread position:
               
46-295
               

               
Cow position:
               
chr29:4070587-4070834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 31
               

               
Conread position:
               
53-275
               

               
Cow position:
               
chr29:31934345-31934570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
56, 144
               

               
Conread position:
               
55-191
               

               
Cow position:
               
chr29:17154747-17154889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 24
               

               
Conread position:
               
55-279
               

               
Cow position:
               
chr29:36357097-36357326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 24
               

               
Conread position:
               
56-194
               

               
Cow position:
               
chr29:40791279-40791418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 23
               

               
Conread position:
               
56-294
               

               
Cow position:
               
chr29:5892814-5893058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
53, 141
               

               
Conread position:
               
56-294
               

               
Cow position:
               
chr29:17109929-17110166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
53, 133
               

               
Conread position:
               
57-279
               

               
Cow position:
               
chr29:5520515-5520286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
15, 20
               

               
Conread position:
               
58-295
               

               
Cow position:
               
chr29:396384-396613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
132, 152
               

               
Conread position:
               
59-216
               

               
Cow position:
               
chr29:16672461-16672629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
16, 127
               

               
Conread position:
               
59-281
               

               
Cow position:
               
chr29:22735133-22734906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
50, 135
               

               
Conread position:
               
59-314
               

               
Cow position:
               
chr29:19949281-19949537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 158
               

               
Conread position:
               
60-250
               

               
Cow position:
               
chr29:24188092-24187903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
12, 19
               

               
Conread position:
               
63-296
               

               
Cow position:
               
chr29:6636061-6636295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
58, 12
               

               
Conread position:
               
63-296
               

               
Cow position:
               
chr29:39329627-39329366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 11
               

               
Conread position:
               
64-250
               

               
Cow position:
               
chr29:8163850-8163667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 9
               

               
Conread position:
               
66-194
               

               
Cow position:
               
chr29:28979519-28979388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
71-194
               

               
Cow position:
               
chr29:34517498-34517376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
116, 7
               

               
Conread position:
               
72-250
               

               
Cow position:
               
chr29:34760427-34760241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
48, 7
               

               
Conread position:
               
77-250
               

               
Cow position:
               
chr29:7954977-7954804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
33, 108
               

               
Conread position:
               
77-281
               

               
Cow position:
               
chr29:19176923-19176715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 126
               

               
Conread position:
               
78-279
               

               
Cow position:
               
chr29:23155219-23155433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
32, 120
               

               
Conread position:
               
80-243
               

               
Cow position:
               
chr29:36210139-36210301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 93
               

               
Conread position:
               
82-283
               

               
Cow position:
               
chr29:18579839-18579617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
42, 14
               

               
Conread position:
               
85-290
               

               
Cow position:
               
chr29:629536-629744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 112
               

               
Conread position:
               
86-280
               

               
Cow position:
               
chr29:26631044-26631248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
38, 33
               

               
Conread position:
               
86-290
               

               
Cow position:
               
chr29:18878482-18878275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 111
               

               
Conread position:
               
86-296
               

               
Cow position:
               
chr29:14576858-14577072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
29, 116
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr29:40615493-40615312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
24, 144
               

               
Conread position:
               
87-280
               

               
Cow position:
               
chr29:2730286-2730082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
29, 143
               

               
Conread position:
               
87-296
               

               
Cow position:
               
chr29:8799008-8798801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
165, 100
               

               
Conread position:
               
92-308
               

               
Cow position:
               
chr29:18748376-18748161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
95, 18
               

               
Conread position:
               
94-272
               

               
Cow position:
               
chr29:40916815-40916989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 7
               

               
Conread position:
               
98-251
               

               
Cow position:
               
chr29:19187044-19187187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
99-285
               

               
Cow position:
               
chr29:27042288-27042474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
25, 94
               

               
Conread position:
               
99-304
               

               
Cow position:
               
chr29:35071066-35070851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
25, 7
               

               
Conread position:
               
101-221
               

               
Cow position:
               
chr29:17022168-17022292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
101-275
               

               
Cow position:
               
chr29:27487204-27487373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 92
               

               
Conread position:
               
101-279
               

               
Cow position:
               
chr29:27042063-27042252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 138
               

               
Conread position:
               
101-284
               

               
Cow position:
               
chr29:25432476-25432657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
133, 10
               

               
Conread position:
               
101-298
               

               
Cow position:
               
chr29:28948990-28949202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
9, 133
               

               
Conread position:
               
109-288
               

               
Cow position:
               
chr29:13091438-13091266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
143, 17
               

               
Conread position:
               
110-250
               

               
Cow position:
               
chr29:7143327-7143459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
110-288
               

               
Cow position:
               
chr29:43088338-43088513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
102, 76
               

               
Conread position:
               
114-250
               

               
Cow position:
               
chr29:33393712-33393848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 114
               

               
Conread position:
               
114-271
               

               
Cow position:
               
chr29:17663727-17663568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
108, 76
               

               
Conread position:
               
114-278
               

               
Cow position:
               
chr29:35737293-35737120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 116
               

               
Conread position:
               
114-284
               

               
Cow position:
               
chr29:37990965-37990784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 116
               

               
Conread position:
               
114-298
               

               
Cow position:
               
chr29:2219421-2219602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
117-286
               

               
Cow position:
               
chr29:7040835-7040662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
136, 73
               

               
Conread position:
               
124-275
               

               
Cow position:
               
chr29:29645278-29645130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
124-279
               

               
Cow position:
               
chr29:3192871-3192724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
124-296
               

               
Cow position:
               
chr29:10847021-10846858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
156, 65
               

               
Conread position:
               
125-285
               

               
Cow position:
               
chr29:18605615-18605464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               
Show alignments to all cow chromosomes.