Cow genome map

Conread name: unkn-MI-P-NA-aeg-d-01-1-UM.s1.ab1

Conread position: 1-472
Cow position: chr2:41150101-41149642 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 320
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 141, 48

Conread position: 1-565
Cow position: chr2:14822636-14822058 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 54

Conread position: 2-558
Cow position: chr2:28643007-28643559 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 20

Conread position: 12-561
Cow position: chr2:34564809-34565365 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 41

Conread position: 12-565
Cow position: chr2:16289349-16288786 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 158

Conread position: 22-559
Cow position: chr2:28620732-28621262 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 149

Conread position: 22-564
Cow position: chr2:39622411-39621847 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 24

Conread position: 30-546
Cow position: chr2:15577460-15577982 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 34

Conread position: 139-565
Cow position: chr2:36053668-36054095 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 19

Conread position: 140-564
Cow position: chr2:2356483-2356915 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 22

Conread position: 151-565
Cow position: chr2:1672699-1673108 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 11

Conread position: 193-557
Cow position: chr2:36030814-36031169 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 23

Conread position: 209-396
Cow position: chr2:24393259-24393442 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 148
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 86, 43

Conread position: 227-563
Cow position: chr2:7902174-7901843 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 43

Conread position: 229-423
Cow position: chr2:73191843-73191650 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 66, 157

Conread position: 229-555
Cow position: chr2:74391210-74391548 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 276

Conread position: 235-564
Cow position: chr2:75676027-75676346 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 234
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 60, 155

Conread position: 238-539
Cow position: chr2:3837114-3837415 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 225
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 57, 23

Conread position: 243-564
Cow position: chr2:7211577-7211260 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 104

Conread position: 243-565
Cow position: chr2:32389666-32389343 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 89

Conread position: 244-565
Cow position: chr2:51304862-51305177 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 84

Conread position: 260-558
Cow position: chr2:20903306-20903580 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 208
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 125, 0

Conread position: 264-550
Cow position: chr2:59963371-59963656 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 198
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 209, 61

Conread position: 265-459
Cow position: chr2:85068713-85068895 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 148
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 181, 30

Conread position: 275-563
Cow position: chr2:16076448-16076736 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 138

Conread position: 277-546
Cow position: chr2:28616362-28616628 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 0

Conread position: 290-563
Cow position: chr2:78762307-78762033 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 106

Conread position: 292-563
Cow position: chr2:5870514-5870779 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 12, 159

Conread position: 293-557
Cow position: chr2:80516890-80516635 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 197
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 29, 11

Conread position: 295-562
Cow position: chr2:78741962-78741691 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 299-563
Cow position: chr2:44935261-44935527 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 312-563
Cow position: chr2:41172492-41172238 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 318-562
Cow position: chr2:175723-175967 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 318-564
Cow position: chr2:422872-422631 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 117

Conread position: 319-476
Cow position: chr2:49590205-49590048 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 319-492
Cow position: chr2:54737312-54737139 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 139
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 319-546
Cow position: chr2:5474320-5474093 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 319-565
Cow position: chr2:57141882-57142128 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 319-565
Cow position: chr2:80955832-80956078 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 320-443
Cow position: chr2:1490173-1490296 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 103
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 320-562
Cow position: chr2:26869070-26868831 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 320-562
Cow position: chr2:44106306-44106548 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 320-562
Cow position: chr2:44346518-44346277 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 320-563
Cow position: chr2:24922203-24921959 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 181
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 50, 0

Conread position: 320-563
Cow position: chr2:53473358-53473597 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 320-564
Cow position: chr2:32655139-32654894 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 320-564
Cow position: chr2:46946470-46946227 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 320-564
Cow position: chr2:52152060-52152303 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 106

Conread position: 320-564
Cow position: chr2:72922028-72922272 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 320-565
Cow position: chr2:11968966-11969212 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 0

Conread position: 322-564
Cow position: chr2:6772371-6772612 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 322-564
Cow position: chr2:82167410-82167168 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 325-564
Cow position: chr2:2363982-2363743 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 325-564
Cow position: chr2:5480871-5481107 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 27

Conread position: 333-562
Cow position: chr2:14560970-14560747 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 59, 0

Show alignments to all cow chromosomes.