Cow genome map
Conread name: | unkn-MI-P-NA-aeg-d-01-1-UM.s1.ab1 |
Conread position: | 1-472 |
Cow position: | chr2:41150101-41149642 (view UCSC Genome Browser custom track) |
Alignm length: | 481 |
Alignm identity: | 320 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 141, 48 |
Conread position: | 1-565 |
Cow position: | chr2:14822636-14822058 (view UCSC Genome Browser custom track) |
Alignm length: | 590 |
Alignm identity: | 419 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 54 |
Conread position: | 2-558 |
Cow position: | chr2:28643007-28643559 (view UCSC Genome Browser custom track) |
Alignm length: | 569 |
Alignm identity: | 398 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 20 |
Conread position: | 12-561 |
Cow position: | chr2:34564809-34565365 (view UCSC Genome Browser custom track) |
Alignm length: | 569 |
Alignm identity: | 388 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 41 |
Conread position: | 12-565 |
Cow position: | chr2:16289349-16288786 (view UCSC Genome Browser custom track) |
Alignm length: | 576 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 158 |
Conread position: | 22-559 |
Cow position: | chr2:28620732-28621262 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 149 |
Conread position: | 22-564 |
Cow position: | chr2:39622411-39621847 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 406 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 24 |
Conread position: | 30-546 |
Cow position: | chr2:15577460-15577982 (view UCSC Genome Browser custom track) |
Alignm length: | 539 |
Alignm identity: | 383 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 34 |
Conread position: | 139-565 |
Cow position: | chr2:36053668-36054095 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 19 |
Conread position: | 140-564 |
Cow position: | chr2:2356483-2356915 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 312 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 22 |
Conread position: | 151-565 |
Cow position: | chr2:1672699-1673108 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 309 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 11 |
Conread position: | 193-557 |
Cow position: | chr2:36030814-36031169 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 23 |
Conread position: | 209-396 |
Cow position: | chr2:24393259-24393442 (view UCSC Genome Browser custom track) |
Alignm length: | 189 |
Alignm identity: | 148 |
Alignm E-value: | 3e-37 |
Alignm gaps (pig, cow): | 86, 43 |
Conread position: | 227-563 |
Cow position: | chr2:7902174-7901843 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 43 |
Conread position: | 229-423 |
Cow position: | chr2:73191843-73191650 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 138 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 66, 157 |
Conread position: | 229-555 |
Cow position: | chr2:74391210-74391548 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 276 |
Conread position: | 235-564 |
Cow position: | chr2:75676027-75676346 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 234 |
Alignm E-value: | 3e-37 |
Alignm gaps (pig, cow): | 60, 155 |
Conread position: | 238-539 |
Cow position: | chr2:3837114-3837415 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 225 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 57, 23 |
Conread position: | 243-564 |
Cow position: | chr2:7211577-7211260 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 104 |
Conread position: | 243-565 |
Cow position: | chr2:32389666-32389343 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 89 |
Conread position: | 244-565 |
Cow position: | chr2:51304862-51305177 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 256, 84 |
Conread position: | 260-558 |
Cow position: | chr2:20903306-20903580 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 208 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 125, 0 |
Conread position: | 264-550 |
Cow position: | chr2:59963371-59963656 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 198 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 209, 61 |
Conread position: | 265-459 |
Cow position: | chr2:85068713-85068895 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 148 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 181, 30 |
Conread position: | 275-563 |
Cow position: | chr2:16076448-16076736 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 217 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 251, 138 |
Conread position: | 277-546 |
Cow position: | chr2:28616362-28616628 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 208 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 111, 0 |
Conread position: | 290-563 |
Cow position: | chr2:78762307-78762033 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 204 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 106 |
Conread position: | 292-563 |
Cow position: | chr2:5870514-5870779 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 205 |
Alignm E-value: | 6e-35 |
Alignm gaps (pig, cow): | 12, 159 |
Conread position: | 293-557 |
Cow position: | chr2:80516890-80516635 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 197 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 29, 11 |
Conread position: | 295-562 |
Cow position: | chr2:78741962-78741691 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 207 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 299-563 |
Cow position: | chr2:44935261-44935527 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 202 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 312-563 |
Cow position: | chr2:41172492-41172238 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 203 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 0 |
Conread position: | 318-562 |
Cow position: | chr2:175723-175967 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 182 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 318-564 |
Cow position: | chr2:422872-422631 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 193 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 89, 117 |
Conread position: | 319-476 |
Cow position: | chr2:49590205-49590048 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 124 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 319-492 |
Cow position: | chr2:54737312-54737139 (view UCSC Genome Browser custom track) |
Alignm length: | 174 |
Alignm identity: | 139 |
Alignm E-value: | 4.00001e-40 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 319-546 |
Cow position: | chr2:5474320-5474093 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 172 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 319-565 |
Cow position: | chr2:57141882-57142128 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 192 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 319-565 |
Cow position: | chr2:80955832-80956078 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 193 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 320-443 |
Cow position: | chr2:1490173-1490296 (view UCSC Genome Browser custom track) |
Alignm length: | 124 |
Alignm identity: | 103 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 320-562 |
Cow position: | chr2:26869070-26868831 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 184 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 0 |
Conread position: | 320-562 |
Cow position: | chr2:44106306-44106548 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 189 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 320-562 |
Cow position: | chr2:44346518-44346277 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 194 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 0 |
Conread position: | 320-563 |
Cow position: | chr2:24922203-24921959 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 181 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 320-563 |
Cow position: | chr2:53473358-53473597 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 186 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 0 |
Conread position: | 320-564 |
Cow position: | chr2:32655139-32654894 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 193 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 0 |
Conread position: | 320-564 |
Cow position: | chr2:46946470-46946227 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 194 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 0 |
Conread position: | 320-564 |
Cow position: | chr2:52152060-52152303 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 197 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 106 |
Conread position: | 320-564 |
Cow position: | chr2:72922028-72922272 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 188 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 320-565 |
Cow position: | chr2:11968966-11969212 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 196 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 225, 0 |
Conread position: | 322-564 |
Cow position: | chr2:6772371-6772612 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 196 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 0 |
Conread position: | 322-564 |
Cow position: | chr2:82167410-82167168 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 195 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 325-564 |
Cow position: | chr2:2363982-2363743 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 188 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 325-564 |
Cow position: | chr2:5480871-5481107 (view UCSC Genome Browser custom track) |
Alignm length: | 241 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 27 |
Conread position: | 333-562 |
Cow position: | chr2:14560970-14560747 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 167 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 59, 0 |
Show alignments to all cow chromosomes.