Cow genome map

Conread name: unkn-MI-P-NA-aeg-d-01-1-UM.s1.ab1

Conread position: 4-183
Cow position: chr3:5391588-5391407 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 83

Conread position: 12-351
Cow position: chr3:66991280-66990924 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 244
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 69, 166

Conread position: 12-563
Cow position: chr3:52863948-52864524 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 89

Conread position: 135-560
Cow position: chr3:29595575-29595149 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 25

Conread position: 139-509
Cow position: chr3:63004366-63004730 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 23

Conread position: 139-562
Cow position: chr3:64357794-64358217 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 30

Conread position: 139-563
Cow position: chr3:48230632-48231054 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 23

Conread position: 150-565
Cow position: chr3:6685815-6685407 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 12

Conread position: 186-492
Cow position: chr3:14632376-14632678 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 186-564
Cow position: chr3:19802975-19802608 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 0

Conread position: 200-561
Cow position: chr3:2908055-2908405 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 131

Conread position: 213-563
Cow position: chr3:39327015-39326665 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 34

Conread position: 229-564
Cow position: chr3:14754015-14754349 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 89

Conread position: 229-564
Cow position: chr3:45774815-45775140 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 0

Conread position: 229-565
Cow position: chr3:4027557-4027218 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 230-563
Cow position: chr3:3980670-3980338 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 243
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 29, 11

Conread position: 236-506
Cow position: chr3:26837484-26837756 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 96

Conread position: 237-564
Cow position: chr3:42579691-42580019 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 13

Conread position: 259-500
Cow position: chr3:32842197-32842436 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 173
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 200, 39

Conread position: 278-423
Cow position: chr3:63241542-63241688 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 17, 0

Conread position: 282-564
Cow position: chr3:15178538-15178262 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 206
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 132, 17

Conread position: 283-564
Cow position: chr3:45868985-45869269 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 114

Conread position: 285-565
Cow position: chr3:36864132-36864412 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 31

Conread position: 286-559
Cow position: chr3:3054821-3054551 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 290-559
Cow position: chr3:49678009-49677740 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 224

Conread position: 290-564
Cow position: chr3:26949736-26949459 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 194

Conread position: 302-562
Cow position: chr3:77423882-77423631 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 302-563
Cow position: chr3:58947665-58947407 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 305-564
Cow position: chr3:42432444-42432179 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 191
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 19, 0

Conread position: 320-553
Cow position: chr3:206969-207202 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 320-562
Cow position: chr3:2634112-2633875 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 320-563
Cow position: chr3:45895366-45895609 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 320-563
Cow position: chr3:45974689-45974446 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 320-564
Cow position: chr3:472724-472480 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 320-564
Cow position: chr3:2654294-2654054 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 65

Conread position: 320-564
Cow position: chr3:31897785-31898029 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 320-564
Cow position: chr3:66638932-66638688 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 320-564
Cow position: chr3:77474954-77474708 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 320-565
Cow position: chr3:31354073-31354318 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 322-564
Cow position: chr3:5829439-5829680 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 333-565
Cow position: chr3:64650805-64650572 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Show alignments to all cow chromosomes.