Cow genome map
| Conread name: | unkn-MI-P-NA-aeg-d-01-1-UM.s1.ab1 |
| Conread position: | 5-183 |
| Cow position: | chr5:27058630-27058803 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 7-565 |
| Cow position: | chr5:41961841-41962392 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 124 |
| Conread position: | 11-553 |
| Cow position: | chr5:46660132-46659573 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 162 |
| Conread position: | 13-349 |
| Cow position: | chr5:61272465-61272800 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 65, 7 |
| Conread position: | 139-450 |
| Cow position: | chr5:40053717-40053420 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 141-562 |
| Cow position: | chr5:49593179-49593606 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 19 |
| Conread position: | 224-520 |
| Cow position: | chr5:51163090-51162791 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 25, 189 |
| Conread position: | 229-465 |
| Cow position: | chr5:27058939-27059178 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 229-465 |
| Cow position: | chr5:27059842-27060081 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 229-493 |
| Cow position: | chr5:27682556-27682826 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 56, 185 |
| Conread position: | 229-563 |
| Cow position: | chr5:27489430-27489096 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 84 |
| Conread position: | 229-564 |
| Cow position: | chr5:39247228-39247535 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 64, 98 |
| Conread position: | 237-503 |
| Cow position: | chr5:18117410-18117668 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 246, 49 |
| Conread position: | 237-564 |
| Cow position: | chr5:25000476-25000797 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 83 |
| Conread position: | 249-544 |
| Cow position: | chr5:41529428-41529724 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 125 |
| Conread position: | 253-563 |
| Cow position: | chr5:14346221-14346532 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 8, 18 |
| Conread position: | 270-565 |
| Cow position: | chr5:46630302-46630595 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 283-562 |
| Cow position: | chr5:32946009-32945723 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 285-442 |
| Cow position: | chr5:10482974-10482817 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 8, 31 |
| Conread position: | 293-565 |
| Cow position: | chr5:26769921-26769656 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 302-553 |
| Cow position: | chr5:57977363-57977117 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 316-563 |
| Cow position: | chr5:46644784-46644535 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 319-429 |
| Cow position: | chr5:56144929-56145039 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 319-565 |
| Cow position: | chr5:44459575-44459329 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 320-450 |
| Cow position: | chr5:6612102-6611972 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 320-526 |
| Cow position: | chr5:27570202-27569998 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 320-550 |
| Cow position: | chr5:34203026-34202800 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 184 |
| Conread position: | 320-550 |
| Cow position: | chr5:45700357-45700127 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 320-557 |
| Cow position: | chr5:4385337-4385110 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 234, 68 |
| Conread position: | 320-564 |
| Cow position: | chr5:9686336-9686581 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 320-564 |
| Cow position: | chr5:20971955-20972185 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 320-564 |
| Cow position: | chr5:27651891-27652136 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 0 |
| Conread position: | 320-564 |
| Cow position: | chr5:41550835-41551080 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 320-564 |
| Cow position: | chr5:49182360-49182116 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 133 |
| Conread position: | 323-562 |
| Cow position: | chr5:32673652-32673894 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 325-565 |
| Cow position: | chr5:47831027-47831258 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 330-564 |
| Cow position: | chr5:32733171-32733405 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.