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Cow genome map

           
Conread name:
           
unkn-MI-P-NA-aeq-b-03-1-UM.s1
        

               
Conread position:
               
52-350
               

               
Cow position:
               
chr9:53326918-53326618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
82, 26
               

               
Conread position:
               
52-486
               

               
Cow position:
               
chr9:40541970-40542376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 23
               

               
Conread position:
               
84-243
               

               
Cow position:
               
chr9:2951644-2951481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 30
               

               
Conread position:
               
89-414
               

               
Cow position:
               
chr9:30652839-30652512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
45, 25
               

               
Conread position:
               
118-367
               

               
Cow position:
               
chr9:5399032-5399287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
118-486
               

               
Cow position:
               
chr9:34468681-34468331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 160
               

               
Conread position:
               
122-374
               

               
Cow position:
               
chr9:42478579-42478312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
122-486
               

               
Cow position:
               
chr9:17872207-17871845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 272
               

               
Conread position:
               
122-486
               

               
Cow position:
               
chr9:51566592-51566225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 182
               

               
Conread position:
               
124-349
               

               
Cow position:
               
chr9:34410491-34410264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
146, 168
               

               
Conread position:
               
124-403
               

               
Cow position:
               
chr9:9815318-9815598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
147, 107
               

               
Conread position:
               
124-412
               

               
Cow position:
               
chr9:8919906-8920190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
28, 33
               

               
Conread position:
               
124-412
               

               
Cow position:
               
chr9:11123578-11123296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
157, 73
               

               
Conread position:
               
124-429
               

               
Cow position:
               
chr9:3738319-3738013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
142, 174
               

               
Conread position:
               
124-444
               

               
Cow position:
               
chr9:42062003-42062336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
14, 250
               

               
Conread position:
               
124-468
               

               
Cow position:
               
chr9:1729769-1729432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 180
               

               
Conread position:
               
124-485
               

               
Cow position:
               
chr9:24887109-24887462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 143
               

               
Conread position:
               
124-486
               

               
Cow position:
               
chr9:15215782-15215419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 90
               

               
Conread position:
               
124-486
               

               
Cow position:
               
chr9:17741037-17740682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 73
               

               
Conread position:
               
124-486
               

               
Cow position:
               
chr9:18110962-18110603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
124-486
               

               
Cow position:
               
chr9:22638007-22638362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 35
               

               
Conread position:
               
124-486
               

               
Cow position:
               
chr9:64091584-64091950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 249
               

               
Conread position:
               
125-486
               

               
Cow position:
               
chr9:28947769-28948114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
24, 10
               

               
Conread position:
               
126-276
               

               
Cow position:
               
chr9:24429191-24429040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 147
               

               
Conread position:
               
126-482
               

               
Cow position:
               
chr9:9200815-9200467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
126-485
               

               
Cow position:
               
chr9:23042684-23043036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
15, 88
               

               
Conread position:
               
127-399
               

               
Cow position:
               
chr9:6852159-6851890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 30
               

               
Conread position:
               
127-480
               

               
Cow position:
               
chr9:25921731-25922079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 228
               

               
Conread position:
               
127-482
               

               
Cow position:
               
chr9:32732771-32732428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 92
               

               
Conread position:
               
128-367
               

               
Cow position:
               
chr9:4263180-4262943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
147, 38
               

               
Conread position:
               
128-482
               

               
Cow position:
               
chr9:64637460-64637803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
128-486
               

               
Cow position:
               
chr9:37069650-37069307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 145
               

               
Conread position:
               
129-266
               

               
Cow position:
               
chr9:39148989-39149126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
129-367
               

               
Cow position:
               
chr9:63153904-63153670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
129-478
               

               
Cow position:
               
chr9:50075972-50076320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 93
               

               
Conread position:
               
129-486
               

               
Cow position:
               
chr9:38961518-38961176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 27
               

               
Conread position:
               
130-416
               

               
Cow position:
               
chr9:4341248-4340974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
175, 137
               

               
Conread position:
               
130-486
               

               
Cow position:
               
chr9:43870886-43871234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 233
               

               
Conread position:
               
130-486
               

               
Cow position:
               
chr9:61847213-61846888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 83
               

               
Conread position:
               
131-237
               

               
Cow position:
               
chr9:36401753-36401647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
131-238
               

               
Cow position:
               
chr9:52998467-52998361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
131-239
               

               
Cow position:
               
chr9:3847314-3847422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
131-248
               

               
Cow position:
               
chr9:34135629-34135745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
131-249
               

               
Cow position:
               
chr9:34707399-34707282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
131-261
               

               
Cow position:
               
chr9:6293506-6293637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
131-261
               

               
Cow position:
               
chr9:55354523-55354653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
131-266
               

               
Cow position:
               
chr9:34014337-34014202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
131-267
               

               
Cow position:
               
chr9:27345671-27345536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
131-268
               

               
Cow position:
               
chr9:54051689-54051823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
131-269
               

               
Cow position:
               
chr9:13742435-13742573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
131-269
               

               
Cow position:
               
chr9:21292496-21292357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
131-270
               

               
Cow position:
               
chr9:25627996-25628135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
131-271
               

               
Cow position:
               
chr9:26859267-26859400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
131-272
               

               
Cow position:
               
chr9:8976494-8976360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
131-272
               

               
Cow position:
               
chr9:8992268-8992126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
131-272
               

               
Cow position:
               
chr9:25375822-25375683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
131-273
               

               
Cow position:
               
chr9:37199040-37199181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
131-273
               

               
Cow position:
               
chr9:41964822-41964681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
131-273
               

               
Cow position:
               
chr9:56827388-56827535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
131-274
               

               
Cow position:
               
chr9:11427571-11427717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
103, 132
               

               
Conread position:
               
131-274
               

               
Cow position:
               
chr9:52258150-52258012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
131-276
               

               
Cow position:
               
chr9:12786561-12786416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
131-276
               

               
Cow position:
               
chr9:39315765-39315903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
131-276
               

               
Cow position:
               
chr9:39758430-39758575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
131-276
               

               
Cow position:
               
chr9:55529712-55529852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
131-277
               

               
Cow position:
               
chr9:24652316-24652462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
131-277
               

               
Cow position:
               
chr9:64629450-64629307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
131-281
               

               
Cow position:
               
chr9:34484506-34484657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
131-284
               

               
Cow position:
               
chr9:47214632-47214480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
131-302
               

               
Cow position:
               
chr9:7806049-7805879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
131-304
               

               
Cow position:
               
chr9:33541967-33542142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
131-309
               

               
Cow position:
               
chr9:8834215-8834039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
147, 100
               

               
Conread position:
               
131-309
               

               
Cow position:
               
chr9:35832706-35832525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
138, 25
               

               
Conread position:
               
131-310
               

               
Cow position:
               
chr9:43342243-43342421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
141, 120
               

               
Conread position:
               
131-311
               

               
Cow position:
               
chr9:9686500-9686321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
145, 101
               

               
Conread position:
               
131-314
               

               
Cow position:
               
chr9:5164073-5163888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
144, 82
               

               
Conread position:
               
131-314
               

               
Cow position:
               
chr9:34279144-34278958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
131-328
               

               
Cow position:
               
chr9:28378880-28379080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
160, 97
               

               
Conread position:
               
131-329
               

               
Cow position:
               
chr9:20755844-20755644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
150, 65
               

               
Conread position:
               
131-331
               

               
Cow position:
               
chr9:23788351-23788551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
178, 102
               

               
Conread position:
               
131-331
               

               
Cow position:
               
chr9:46664737-46664935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
37, 91
               

               
Conread position:
               
131-332
               

               
Cow position:
               
chr9:50310847-50310659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
131-332
               

               
Cow position:
               
chr9:64064451-64064246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
141, 187
               

               
Conread position:
               
131-333
               

               
Cow position:
               
chr9:52598809-52598608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
179, 152
               

               
Conread position:
               
131-334
               

               
Cow position:
               
chr9:3343661-3343859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
131-334
               

               
Cow position:
               
chr9:33584773-33584566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
145, 121
               

               
Conread position:
               
131-334
               

               
Cow position:
               
chr9:38941520-38941315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
139, 155
               

               
Conread position:
               
131-335
               

               
Cow position:
               
chr9:54493047-54493255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
144, 201
               

               
Conread position:
               
131-336
               

               
Cow position:
               
chr9:5342335-5342134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
131-338
               

               
Cow position:
               
chr9:25583742-25583951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
144, 100
               

               
Conread position:
               
131-338
               

               
Cow position:
               
chr9:38645432-38645223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
79, 63
               

               
Conread position:
               
131-342
               

               
Cow position:
               
chr9:3353274-3353475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
176, 52
               

               
Conread position:
               
131-352
               

               
Cow position:
               
chr9:52267843-52267622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
155, 82
               

               
Conread position:
               
131-363
               

               
Cow position:
               
chr9:33114258-33114492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
148, 95
               

               
Conread position:
               
131-364
               

               
Cow position:
               
chr9:39011557-39011330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
131-364
               

               
Cow position:
               
chr9:41394735-41394508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
131-364
               

               
Cow position:
               
chr9:52839967-52839740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
176, 13
               

               
Conread position:
               
131-365
               

               
Cow position:
               
chr9:34283866-34284095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 25
               

               
Conread position:
               
131-366
               

               
Cow position:
               
chr9:38624712-38624481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
141, 158
               

               
Conread position:
               
131-366
               

               
Cow position:
               
chr9:52513536-52513304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 167
               

               
Conread position:
               
131-368
               

               
Cow position:
               
chr9:18425824-18426068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
42, 37
               

               
Conread position:
               
131-371
               

               
Cow position:
               
chr9:9311770-9312015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
144, 194
               

               
Conread position:
               
131-372
               

               
Cow position:
               
chr9:28686300-28686546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
150, 39
               

               
Conread position:
               
131-388
               

               
Cow position:
               
chr9:12280882-12281137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
10, 198
               

               
Conread position:
               
131-388
               

               
Cow position:
               
chr9:12910491-12910234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
12, 161
               

               
Conread position:
               
131-389
               

               
Cow position:
               
chr9:51720985-51720733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 101
               

               
Conread position:
               
131-390
               

               
Cow position:
               
chr9:23264906-23265162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
145, 60
               

               
Conread position:
               
131-391
               

               
Cow position:
               
chr9:23261345-23261604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
147, 60
               

               
Conread position:
               
131-391
               

               
Cow position:
               
chr9:26477127-26477387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
131-394
               

               
Cow position:
               
chr9:17518577-17518315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 171
               

               
Conread position:
               
131-397
               

               
Cow position:
               
chr9:40215158-40215420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 84
               

               
Conread position:
               
131-401
               

               
Cow position:
               
chr9:8901314-8901043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 26
               

               
Conread position:
               
131-403
               

               
Cow position:
               
chr9:35105878-35105598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 207
               

               
Conread position:
               
131-406
               

               
Cow position:
               
chr9:31638745-31638455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
10, 86
               

               
Conread position:
               
131-407
               

               
Cow position:
               
chr9:33237307-33237579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
146, 46
               

               
Conread position:
               
131-411
               

               
Cow position:
               
chr9:19555289-19555565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
156, 13
               

               
Conread position:
               
131-412
               

               
Cow position:
               
chr9:30123841-30124112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
144, 82
               

               
Conread position:
               
131-412
               

               
Cow position:
               
chr9:57274132-57274424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
131-416
               

               
Cow position:
               
chr9:17677198-17676925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 28
               

               
Conread position:
               
131-425
               

               
Cow position:
               
chr9:62668162-62668457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 24
               

               
Conread position:
               
131-435
               

               
Cow position:
               
chr9:58614407-58614704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
179, 13
               

               
Conread position:
               
131-439
               

               
Cow position:
               
chr9:43443716-43444010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 83
               

               
Conread position:
               
131-444
               

               
Cow position:
               
chr9:1938036-1938346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
39, 196
               

               
Conread position:
               
131-444
               

               
Cow position:
               
chr9:17799544-17799850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
68, 22
               

               
Conread position:
               
131-444
               

               
Cow position:
               
chr9:48627940-48628250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
144, 179
               

               
Conread position:
               
131-445
               

               
Cow position:
               
chr9:44834050-44833744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
179, 27
               

               
Conread position:
               
131-447
               

               
Cow position:
               
chr9:1972860-1973165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 82
               

               
Conread position:
               
131-454
               

               
Cow position:
               
chr9:6338705-6339032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
131-456
               

               
Cow position:
               
chr9:11313602-11313275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 161
               

               
Conread position:
               
131-456
               

               
Cow position:
               
chr9:43623180-43623492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
19, 28
               

               
Conread position:
               
131-457
               

               
Cow position:
               
chr9:4268072-4267747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 170
               

               
Conread position:
               
131-458
               

               
Cow position:
               
chr9:52619561-52619886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
131-461
               

               
Cow position:
               
chr9:45141688-45141368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
178, 143
               

               
Conread position:
               
131-463
               

               
Cow position:
               
chr9:29824943-29825275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
134, 13
               

               
Conread position:
               
131-466
               

               
Cow position:
               
chr9:3186038-3186385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
131-469
               

               
Cow position:
               
chr9:8562734-8563086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
102, 244
               

               
Conread position:
               
131-469
               

               
Cow position:
               
chr9:52130927-52131263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
139, 50
               

               
Conread position:
               
131-470
               

               
Cow position:
               
chr9:50139197-50139527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 156
               

               
Conread position:
               
131-472
               

               
Cow position:
               
chr9:8337939-8338278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 200
               

               
Conread position:
               
131-472
               

               
Cow position:
               
chr9:55256640-55256301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
134, 232
               

               
Conread position:
               
131-473
               

               
Cow position:
               
chr9:18217187-18216851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 196
               

               
Conread position:
               
131-473
               

               
Cow position:
               
chr9:31079167-31078833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 16
               

               
Conread position:
               
131-473
               

               
Cow position:
               
chr9:31814474-31814129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 259
               

               
Conread position:
               
131-473
               

               
Cow position:
               
chr9:33119976-33119633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 233
               

               
Conread position:
               
131-478
               

               
Cow position:
               
chr9:33681571-33681938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 183
               

               
Conread position:
               
131-480
               

               
Cow position:
               
chr9:29185225-29184877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 26
               

               
Conread position:
               
131-482
               

               
Cow position:
               
chr9:5594414-5594758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 144
               

               
Conread position:
               
131-482
               

               
Cow position:
               
chr9:9403268-9402927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
13, 92
               

               
Conread position:
               
131-482
               

               
Cow position:
               
chr9:26057518-26057190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 26
               

               
Conread position:
               
131-482
               

               
Cow position:
               
chr9:28354429-28354791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 184
               

               
Conread position:
               
131-482
               

               
Cow position:
               
chr9:50081128-50080788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 147
               

               
Conread position:
               
131-482
               

               
Cow position:
               
chr9:55287977-55287633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 81
               

               
Conread position:
               
131-482
               

               
Cow position:
               
chr9:56772988-56773337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
90, 78
               

               
Conread position:
               
131-483
               

               
Cow position:
               
chr9:13169752-13169410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
15, 209
               

               
Conread position:
               
131-483
               

               
Cow position:
               
chr9:31626046-31626407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
65, 122
               

               
Conread position:
               
131-484
               

               
Cow position:
               
chr9:32307319-32306976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 100
               

               
Conread position:
               
131-484
               

               
Cow position:
               
chr9:51204644-51204985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
291, 21
               

               
Conread position:
               
131-484
               

               
Cow position:
               
chr9:52407083-52407430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
131-484
               

               
Cow position:
               
chr9:55795671-55796019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
144, 54
               

               
Conread position:
               
131-485
               

               
Cow position:
               
chr9:17411281-17410924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 289
               

               
Conread position:
               
131-485
               

               
Cow position:
               
chr9:26085970-26086328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 92
               

               
Conread position:
               
131-485
               

               
Cow position:
               
chr9:44822412-44822041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
94, 205
               

               
Conread position:
               
131-485
               

               
Cow position:
               
chr9:54528426-54528776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 82
               

               
Conread position:
               
131-485
               

               
Cow position:
               
chr9:54716690-54716361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 78
               

               
Conread position:
               
131-485
               

               
Cow position:
               
chr9:63745727-63746065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 81
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:1520827-1520469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 25
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:1751249-1751596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 155
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:4861296-4861654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 231
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:5245765-5246111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 167
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:5327170-5327516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 168
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:5500764-5501113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 236
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:7634183-7634529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 233
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:8998261-8998617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 238
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:9199867-9199522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 49
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:9406141-9405793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
154, 181
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:9443689-9443335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 99
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:9516838-9516508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:9552003-9552349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 16
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:10010727-10011062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 50
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:13670545-13670898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 107
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:14796858-14796516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 147
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:15806011-15805659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 197
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:18380777-18381121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
155, 83
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:19067696-19068060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
155, 39
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:19713992-19714331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 167
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:21460239-21459895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 82
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:22152173-22151825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 102
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:22443714-22443349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 9
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:23388761-23388416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
14, 75
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:26279257-26278911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 132
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:26435145-26434805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
99, 46
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:28726818-28726464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 240
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:29006470-29006822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
147, 26
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:30402514-30402158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 236
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:33219037-33218690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 56
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:33597898-33598243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 143
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:33940518-33940869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 25
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:34286711-34287056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 234
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:34375012-34374667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 133
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:35167088-35167430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:37016810-37017146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:41416245-41416613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 284
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:42446070-42445720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 9
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:44832141-44831792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
15, 59
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:45756276-45756619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 9
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:49764560-49764918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 238
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:50977341-50976984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 26
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:52485003-52484655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:52505394-52505041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:52578623-52578271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 9
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:53413326-53412987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
179, 135
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:54677176-54677484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:55084389-55084035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 61
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:56032404-56032066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 152
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:56453252-56453594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 9
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:60110162-60110495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
144, 97
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:61997691-61997333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 51
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:64050649-64050293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 133
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:64155939-64155594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 143
               

               
Conread position:
               
131-486
               

               
Cow position:
               
chr9:64559970-64559625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 84
               

               
Conread position:
               
132-262
               

               
Cow position:
               
chr9:32089301-32089432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
132-269
               

               
Cow position:
               
chr9:12337815-12337952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
132-270
               

               
Cow position:
               
chr9:44584507-44584644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
132-276
               

               
Cow position:
               
chr9:34888381-34888241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
132-281
               

               
Cow position:
               
chr9:35793590-35793732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
132-290
               

               
Cow position:
               
chr9:32955771-32955614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
132-291
               

               
Cow position:
               
chr9:54664768-54664925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
132-309
               

               
Cow position:
               
chr9:9503002-9503170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
132-334
               

               
Cow position:
               
chr9:19902995-19903196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
132-347
               

               
Cow position:
               
chr9:4630017-4630234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
146, 84
               

               
Conread position:
               
132-361
               

               
Cow position:
               
chr9:10819915-10819689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
178, 105
               

               
Conread position:
               
132-362
               

               
Cow position:
               
chr9:33696949-33697173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
149, 35
               

               
Conread position:
               
132-369
               

               
Cow position:
               
chr9:20815783-20816014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
178, 26
               

               
Conread position:
               
132-389
               

               
Cow position:
               
chr9:31215993-31216257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
43, 78
               

               
Conread position:
               
132-406
               

               
Cow position:
               
chr9:22434015-22433746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
224, 100
               

               
Conread position:
               
132-407
               

               
Cow position:
               
chr9:12226064-12225796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
143, 39
               

               
Conread position:
               
132-473
               

               
Cow position:
               
chr9:4646410-4646079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 9
               

               
Conread position:
               
132-473
               

               
Cow position:
               
chr9:20847848-20848185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
153, 51
               

               
Conread position:
               
132-478
               

               
Cow position:
               
chr9:10118740-10118411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
178, 27
               

               
Conread position:
               
132-478
               

               
Cow position:
               
chr9:31346863-31347208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 85
               

               
Conread position:
               
132-485
               

               
Cow position:
               
chr9:6934160-6933811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 72
               

               
Conread position:
               
132-486
               

               
Cow position:
               
chr9:823875-824217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
154, 38
               

               
Conread position:
               
132-486
               

               
Cow position:
               
chr9:5219259-5218917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
89, 212
               

               
Conread position:
               
132-486
               

               
Cow position:
               
chr9:5836058-5836424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 167
               

               
Conread position:
               
132-486
               

               
Cow position:
               
chr9:9753478-9753133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 25
               

               
Conread position:
               
132-486
               

               
Cow position:
               
chr9:13205653-13205308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
145, 52
               

               
Conread position:
               
132-486
               

               
Cow position:
               
chr9:14975006-14974664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 42
               

               
Conread position:
               
132-486
               

               
Cow position:
               
chr9:18342644-18342985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
14, 133
               

               
Conread position:
               
132-486
               

               
Cow position:
               
chr9:20406568-20406900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
179, 48
               

               
Conread position:
               
132-486
               

               
Cow position:
               
chr9:21888083-21888431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 100
               

               
Conread position:
               
132-486
               

               
Cow position:
               
chr9:28392113-28391768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
31, 142
               

               
Conread position:
               
132-486
               

               
Cow position:
               
chr9:29684058-29684409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
130, 15
               

               
Conread position:
               
132-486
               

               
Cow position:
               
chr9:36410434-36410090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
150, 25
               

               
Conread position:
               
132-486
               

               
Cow position:
               
chr9:44467427-44467087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 116
               

               
Conread position:
               
132-486
               

               
Cow position:
               
chr9:55075215-55074873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 88
               

               
Conread position:
               
132-486
               

               
Cow position:
               
chr9:62357616-62357269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
7, 82
               

               
Conread position:
               
133-265
               

               
Cow position:
               
chr9:24243809-24243675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
133-267
               

               
Cow position:
               
chr9:11030102-11030232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
133-270
               

               
Cow position:
               
chr9:23970983-23970845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
133-273
               

               
Cow position:
               
chr9:14738163-14738303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
133-276
               

               
Cow position:
               
chr9:58369082-58368940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
133-277
               

               
Cow position:
               
chr9:52763845-52763702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
133-309
               

               
Cow position:
               
chr9:23797150-23797327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
142, 169
               

               
Conread position:
               
133-326
               

               
Cow position:
               
chr9:18828140-18827946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
80, 84
               

               
Conread position:
               
133-330
               

               
Cow position:
               
chr9:45171309-45171106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
133-336
               

               
Cow position:
               
chr9:5469784-5469980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
133-352
               

               
Cow position:
               
chr9:31359518-31359735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
86, 112
               

               
Conread position:
               
133-360
               

               
Cow position:
               
chr9:1878088-1877863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
174, 101
               

               
Conread position:
               
133-361
               

               
Cow position:
               
chr9:32348900-32348678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
178, 154
               

               
Conread position:
               
133-363
               

               
Cow position:
               
chr9:32670033-32669802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
144, 158
               

               
Conread position:
               
133-384
               

               
Cow position:
               
chr9:19034271-19034504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
178, 70
               

               
Conread position:
               
133-409
               

               
Cow position:
               
chr9:9654393-9654123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
153, 80
               

               
Conread position:
               
133-409
               

               
Cow position:
               
chr9:62151027-62151290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
133-412
               

               
Cow position:
               
chr9:10650385-10650109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
227, 57
               

               
Conread position:
               
133-413
               

               
Cow position:
               
chr9:37677808-37678080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 80
               

               
Conread position:
               
133-439
               

               
Cow position:
               
chr9:16811740-16811444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
168, 141
               

               
Conread position:
               
133-450
               

               
Cow position:
               
chr9:27279223-27279544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 158
               

               
Conread position:
               
133-457
               

               
Cow position:
               
chr9:46981313-46981000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
99, 147
               

               
Conread position:
               
133-462
               

               
Cow position:
               
chr9:58972580-58972255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
170, 54
               

               
Conread position:
               
133-482
               

               
Cow position:
               
chr9:63194521-63194866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
10, 25
               

               
Conread position:
               
133-484
               

               
Cow position:
               
chr9:22696137-22696477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 63
               

               
Conread position:
               
133-485
               

               
Cow position:
               
chr9:10144562-10144210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
12, 82
               

               
Conread position:
               
133-486
               

               
Cow position:
               
chr9:5763716-5763368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 24
               

               
Conread position:
               
133-486
               

               
Cow position:
               
chr9:9723962-9723620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 80
               

               
Conread position:
               
133-486
               

               
Cow position:
               
chr9:20901207-20900868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
93, 37
               

               
Conread position:
               
133-486
               

               
Cow position:
               
chr9:34697385-34697033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 74
               

               
Conread position:
               
133-486
               

               
Cow position:
               
chr9:48118767-48118440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 49
               

               
Conread position:
               
133-486
               

               
Cow position:
               
chr9:52689697-52689362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
133-486
               

               
Cow position:
               
chr9:57897196-57896863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
172, 139
               

               
Conread position:
               
133-486
               

               
Cow position:
               
chr9:63785000-63784663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
250, 143
               

               
Conread position:
               
134-276
               

               
Cow position:
               
chr9:33347575-33347433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
134-332
               

               
Cow position:
               
chr9:9358725-9358927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
141, 106
               

               
Conread position:
               
134-364
               

               
Cow position:
               
chr9:63896457-63896682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
141, 22
               

               
Conread position:
               
134-383
               

               
Cow position:
               
chr9:3774080-3774327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 66
               

               
Conread position:
               
134-469
               

               
Cow position:
               
chr9:9573239-9573580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
76, 23
               

               
Conread position:
               
134-472
               

               
Cow position:
               
chr9:8288533-8288865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 71
               

               
Conread position:
               
134-480
               

               
Cow position:
               
chr9:59013424-59013079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
131, 76
               

               
Conread position:
               
134-482
               

               
Cow position:
               
chr9:39681254-39681614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 329
               

               
Conread position:
               
134-486
               

               
Cow position:
               
chr9:22318267-22318600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 25
               

               
Conread position:
               
134-486
               

               
Cow position:
               
chr9:26403700-26404051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 223
               

               
Conread position:
               
134-486
               

               
Cow position:
               
chr9:41282930-41283288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 137
               

               
Conread position:
               
134-486
               

               
Cow position:
               
chr9:61738837-61739179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 181
               

               
Conread position:
               
135-261
               

               
Cow position:
               
chr9:20637290-20637415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
135-264
               

               
Cow position:
               
chr9:60355298-60355167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
135-276
               

               
Cow position:
               
chr9:34973796-34973655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
135-305
               

               
Cow position:
               
chr9:5110774-5110946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
17, 22
               

               
Conread position:
               
135-311
               

               
Cow position:
               
chr9:58662160-58662331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
135-313
               

               
Cow position:
               
chr9:25400282-25400101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
137, 69
               

               
Conread position:
               
135-317
               

               
Cow position:
               
chr9:41781570-41781753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
135-331
               

               
Cow position:
               
chr9:22461816-22461627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 56
               

               
Conread position:
               
135-350
               

               
Cow position:
               
chr9:13744014-13743800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
140, 155
               

               
Conread position:
               
135-367
               

               
Cow position:
               
chr9:6596314-6596085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
151, 54
               

               
Conread position:
               
135-371
               

               
Cow position:
               
chr9:1867367-1867604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 112
               

               
Conread position:
               
135-381
               

               
Cow position:
               
chr9:11304159-11303917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 78
               

               
Conread position:
               
135-389
               

               
Cow position:
               
chr9:31557811-31557560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
140, 35
               

               
Conread position:
               
135-392
               

               
Cow position:
               
chr9:60395132-60394879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
170, 136
               

               
Conread position:
               
135-395
               

               
Cow position:
               
chr9:4580488-4580242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
176, 144
               

               
Conread position:
               
135-405
               

               
Cow position:
               
chr9:55321553-55321822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
140, 204
               

               
Conread position:
               
135-407
               

               
Cow position:
               
chr9:20579678-20579419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
142, 78
               

               
Conread position:
               
135-411
               

               
Cow position:
               
chr9:53139215-53138940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
106, 22
               

               
Conread position:
               
135-416
               

               
Cow position:
               
chr9:25804747-25805030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
35, 83
               

               
Conread position:
               
135-416
               

               
Cow position:
               
chr9:41728176-41728453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
138, 52
               

               
Conread position:
               
135-425
               

               
Cow position:
               
chr9:6397867-6397576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
83, 22
               

               
Conread position:
               
135-462
               

               
Cow position:
               
chr9:11319718-11319394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 175
               

               
Conread position:
               
135-463
               

               
Cow position:
               
chr9:15006833-15006512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
135-467
               

               
Cow position:
               
chr9:6839909-6840254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
135-478
               

               
Cow position:
               
chr9:18215992-18215655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
176, 21
               

               
Conread position:
               
135-480
               

               
Cow position:
               
chr9:8937069-8937404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
175, 22
               

               
Conread position:
               
135-480
               

               
Cow position:
               
chr9:9596036-9595698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 152
               

               
Conread position:
               
135-482
               

               
Cow position:
               
chr9:6192543-6192201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
73, 12
               

               
Conread position:
               
135-482
               

               
Cow position:
               
chr9:9461738-9461397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 31
               

               
Conread position:
               
135-482
               

               
Cow position:
               
chr9:20942699-20942353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
100, 22
               

               
Conread position:
               
135-482
               

               
Cow position:
               
chr9:62656719-62657050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
66, 140
               

               
Conread position:
               
135-485
               

               
Cow position:
               
chr9:47868932-47869268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 79
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:2114091-2113742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 51
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:3070492-3070161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 21
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:3931879-3932229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
140, 26
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:4858451-4858796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:6879695-6880032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 85
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:7409679-7410044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 300
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:8657515-8657172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:10667107-10666762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
153, 58
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:17310645-17310300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 21
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:20322177-20321854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
332, 78
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:28983099-28983443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
140, 75
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:29840820-29841149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 21
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:33101199-33100878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
175, 91
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:34309944-34310296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
10, 28
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:34902185-34901853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 78
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:34958140-34957789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 193
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:35100806-35101129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:42497741-42498091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 51
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:44709745-44710084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 95
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:47472601-47472958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 82
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chr9:51620361-51620698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
175, 78
               

               
Conread position:
               
136-314
               

               
Cow position:
               
chr9:5650055-5649877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
133, 77
               

               
Conread position:
               
136-352
               

               
Cow position:
               
chr9:44396579-44396794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
177, 104
               

               
Conread position:
               
136-392
               

               
Cow position:
               
chr9:22408674-22408924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
65, 111
               

               
Conread position:
               
136-401
               

               
Cow position:
               
chr9:11168647-11168911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 225
               

               
Conread position:
               
136-406
               

               
Cow position:
               
chr9:56065481-56065734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
136-465
               

               
Cow position:
               
chr9:56011416-56011738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 149
               

               
Conread position:
               
136-469
               

               
Cow position:
               
chr9:389100-388770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
16, 95
               

               
Conread position:
               
136-480
               

               
Cow position:
               
chr9:54681427-54681758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 20
               

               
Conread position:
               
136-482
               

               
Cow position:
               
chr9:31125011-31124665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
136, 22
               

               
Conread position:
               
136-482
               

               
Cow position:
               
chr9:52000936-52001265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 38
               

               
Conread position:
               
136-485
               

               
Cow position:
               
chr9:5433549-5433896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 229
               

               
Conread position:
               
136-486
               

               
Cow position:
               
chr9:5392986-5393313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 58
               

               
Conread position:
               
136-486
               

               
Cow position:
               
chr9:8723711-8724058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 86
               

               
Conread position:
               
136-486
               

               
Cow position:
               
chr9:16300652-16300309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 169
               

               
Conread position:
               
136-486
               

               
Cow position:
               
chr9:18252995-18252661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
136-486
               

               
Cow position:
               
chr9:58134086-58133760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 60
               

               
Conread position:
               
137-282
               

               
Cow position:
               
chr9:5072915-5072775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
137-428
               

               
Cow position:
               
chr9:50543509-50543216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 14
               

               
Conread position:
               
137-451
               

               
Cow position:
               
chr9:30477856-30477557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 24
               

               
Conread position:
               
137-472
               

               
Cow position:
               
chr9:47955324-47954977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
101, 20
               

               
Conread position:
               
137-485
               

               
Cow position:
               
chr9:3782288-3782624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
173, 35
               

               
Conread position:
               
137-485
               

               
Cow position:
               
chr9:20416588-20416247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 83
               

               
Conread position:
               
137-485
               

               
Cow position:
               
chr9:56252820-56253161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
133, 24
               

               
Conread position:
               
137-486
               

               
Cow position:
               
chr9:3379061-3379378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
137-486
               

               
Cow position:
               
chr9:5227257-5226902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 100
               

               
Conread position:
               
137-486
               

               
Cow position:
               
chr9:5757071-5756741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 130
               

               
Conread position:
               
137-486
               

               
Cow position:
               
chr9:10309078-10308745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 62
               

               
Conread position:
               
137-486
               

               
Cow position:
               
chr9:28747602-28747260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 137
               

               
Conread position:
               
137-486
               

               
Cow position:
               
chr9:32371833-32371498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 60
               

               
Conread position:
               
137-486
               

               
Cow position:
               
chr9:38846415-38846087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 83
               

               
Conread position:
               
137-486
               

               
Cow position:
               
chr9:58204591-58204928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
116, 124
               

               
Conread position:
               
138-305
               

               
Cow position:
               
chr9:38289404-38289238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
14, 20
               

               
Conread position:
               
138-332
               

               
Cow position:
               
chr9:29819638-29819832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
136, 33
               

               
Conread position:
               
138-483
               

               
Cow position:
               
chr9:55889734-55890068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 13
               

               
Conread position:
               
138-486
               

               
Cow position:
               
chr9:59795375-59795018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 90
               

               
Conread position:
               
139-459
               

               
Cow position:
               
chr9:15225376-15225055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 135
               

               
Conread position:
               
139-481
               

               
Cow position:
               
chr9:20318651-20318321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
139-486
               

               
Cow position:
               
chr9:33092878-33093206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
139-486
               

               
Cow position:
               
chr9:47906359-47906027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 26
               

               
Conread position:
               
140-331
               

               
Cow position:
               
chr9:23956059-23955870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
170, 138
               

               
Conread position:
               
140-482
               

               
Cow position:
               
chr9:25964911-25964566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 18
               

               
Conread position:
               
140-486
               

               
Cow position:
               
chr9:5319543-5319891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 58
               

               
Conread position:
               
141-334
               

               
Cow position:
               
chr9:53109173-53109369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
145, 75
               

               
Conread position:
               
141-486
               

               
Cow position:
               
chr9:19539024-19539359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 16
               

               
Conread position:
               
141-486
               

               
Cow position:
               
chr9:21030231-21030578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 17
               

               
Conread position:
               
142-313
               

               
Cow position:
               
chr9:48100718-48100893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
6, 21
               

               
Conread position:
               
142-325
               

               
Cow position:
               
chr9:55532737-55532922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
142-350
               

               
Cow position:
               
chr9:23268953-23269163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
134, 49
               

               
Conread position:
               
142-486
               

               
Cow position:
               
chr9:3220059-3220385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 169
               

               
Conread position:
               
143-255
               

               
Cow position:
               
chr9:52807480-52807369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
143-270
               

               
Cow position:
               
chr9:39135707-39135577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
143-325
               

               
Cow position:
               
chr9:32982151-32981964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
82, 154
               

               
Conread position:
               
143-351
               

               
Cow position:
               
chr9:8636591-8636803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
143-382
               

               
Cow position:
               
chr9:36843717-36843949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
91, 136
               

               
Conread position:
               
143-385
               

               
Cow position:
               
chr9:49293219-49292981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
167, 131
               

               
Conread position:
               
143-394
               

               
Cow position:
               
chr9:60027121-60027371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
91, 198
               

               
Conread position:
               
143-468
               

               
Cow position:
               
chr9:767225-766906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
90, 16
               

               
Conread position:
               
143-478
               

               
Cow position:
               
chr9:7362952-7363281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 25
               

               
Conread position:
               
143-482
               

               
Cow position:
               
chr9:41513556-41513877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 34
               

               
Conread position:
               
143-482
               

               
Cow position:
               
chr9:55118011-55118336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 84
               

               
Conread position:
               
143-483
               

               
Cow position:
               
chr9:58979322-58979660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 73
               

               
Conread position:
               
143-484
               

               
Cow position:
               
chr9:59386845-59386517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 164
               

               
Conread position:
               
143-486
               

               
Cow position:
               
chr9:5509650-5509986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 13
               

               
Conread position:
               
143-486
               

               
Cow position:
               
chr9:24997595-24997254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 52
               

               
Conread position:
               
143-486
               

               
Cow position:
               
chr9:36490977-36490633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
46, 234
               

               
Conread position:
               
143-486
               

               
Cow position:
               
chr9:45285611-45285269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
132, 193
               

               
Conread position:
               
143-486
               

               
Cow position:
               
chr9:46316857-46316526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 42
               

               
Conread position:
               
143-486
               

               
Cow position:
               
chr9:50607021-50606692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
134, 70
               

               
Conread position:
               
144-316
               

               
Cow position:
               
chr9:42298117-42298282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
131, 46
               

               
Conread position:
               
144-352
               

               
Cow position:
               
chr9:40005399-40005610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
144-393
               

               
Cow position:
               
chr9:44921474-44921218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
144-439
               

               
Cow position:
               
chr9:19493541-19493244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 221
               

               
Conread position:
               
144-472
               

               
Cow position:
               
chr9:56088142-56087821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
33, 13
               

               
Conread position:
               
144-473
               

               
Cow position:
               
chr9:48564005-48564344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
64, 13
               

               
Conread position:
               
144-482
               

               
Cow position:
               
chr9:23431222-23430884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 73
               

               
Conread position:
               
144-486
               

               
Cow position:
               
chr9:11299755-11299435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
131, 69
               

               
Conread position:
               
144-486
               

               
Cow position:
               
chr9:24872761-24873111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
133, 69
               

               
Conread position:
               
144-486
               

               
Cow position:
               
chr9:36445545-36445884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 209
               

               
Conread position:
               
145-365
               

               
Cow position:
               
chr9:26310432-26310650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
125, 183
               

               
Conread position:
               
145-367
               

               
Cow position:
               
chr9:51557559-51557349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
133, 11
               

               
Conread position:
               
145-486
               

               
Cow position:
               
chr9:41679673-41679997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 140
               

               
Conread position:
               
146-486
               

               
Cow position:
               
chr9:11146707-11146393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
147-412
               

               
Cow position:
               
chr9:49416916-49417179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 10
               

               
Conread position:
               
147-468
               

               
Cow position:
               
chr9:64105827-64106150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
72, 61
               

               
Conread position:
               
147-486
               

               
Cow position:
               
chr9:20090974-20091300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 181
               

               
Conread position:
               
147-486
               

               
Cow position:
               
chr9:44915169-44914833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 112
               

               
Conread position:
               
148-334
               

               
Cow position:
               
chr9:21080492-21080679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
128, 42
               

               
Conread position:
               
148-482
               

               
Cow position:
               
chr9:30019911-30020237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
140, 13
               

               
Conread position:
               
148-486
               

               
Cow position:
               
chr9:13994097-13994450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
115, 10
               

               
Conread position:
               
149-480
               

               
Cow position:
               
chr9:39577669-39577990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 36
               

               
Conread position:
               
149-484
               

               
Cow position:
               
chr9:31640395-31640059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
5, 9
               

               
Conread position:
               
150-327
               

               
Cow position:
               
chr9:40776729-40776907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
151-424
               

               
Cow position:
               
chr9:11363830-11364097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
136, 10
               

               
Conread position:
               
151-485
               

               
Cow position:
               
chr9:214527-214201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
159, 12
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr9:13761033-13761198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
153-358
               

               
Cow position:
               
chr9:41486308-41486100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
153-360
               

               
Cow position:
               
chr9:54178486-54178290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
155, 81
               

               
Conread position:
               
155-472
               

               
Cow position:
               
chr9:5209516-5209832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 139
               

               
Conread position:
               
156-486
               

               
Cow position:
               
chr9:1949854-1950181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 132
               

               
Conread position:
               
156-486
               

               
Cow position:
               
chr9:8534753-8534421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 157
               

               
Conread position:
               
157-482
               

               
Cow position:
               
chr9:2858473-2858799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
157-482
               

               
Cow position:
               
chr9:41958848-41958537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
206, 96
               

               
Conread position:
               
157-486
               

               
Cow position:
               
chr9:5162112-5161804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
157-486
               

               
Cow position:
               
chr9:6065359-6065034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 13
               

               
Conread position:
               
158-447
               

               
Cow position:
               
chr9:42264152-42264444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
46, 118
               

               
Conread position:
               
158-456
               

               
Cow position:
               
chr9:13221953-13221661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 60
               

               
Conread position:
               
158-486
               

               
Cow position:
               
chr9:12183686-12184011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
16, 26
               

               
Conread position:
               
160-406
               

               
Cow position:
               
chr9:34106655-34106908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
22, 112
               

               
Conread position:
               
160-412
               

               
Cow position:
               
chr9:32817200-32816942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
116, 25
               

               
Conread position:
               
160-430
               

               
Cow position:
               
chr9:39428858-39428590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
126, 25
               

               
Conread position:
               
160-482
               

               
Cow position:
               
chr9:44108892-44108572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
59, 25
               

               
Conread position:
               
160-486
               

               
Cow position:
               
chr9:14960889-14961211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
128, 25
               

               
Conread position:
               
160-486
               

               
Cow position:
               
chr9:43911871-43912191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
86, 23
               

               
Conread position:
               
160-486
               

               
Cow position:
               
chr9:44217715-44218024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
150, 25
               

               
Conread position:
               
160-486
               

               
Cow position:
               
chr9:54924561-54924888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
110, 21
               

               
Conread position:
               
161-362
               

               
Cow position:
               
chr9:43936887-43937084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
145, 112
               

               
Conread position:
               
161-406
               

               
Cow position:
               
chr9:9823564-9823320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
120, 78
               

               
Conread position:
               
161-455
               

               
Cow position:
               
chr9:40303197-40302894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
69, 210
               

               
Conread position:
               
161-468
               

               
Cow position:
               
chr9:49709789-49710088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 52
               

               
Conread position:
               
161-482
               

               
Cow position:
               
chr9:17928699-17929030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
161-482
               

               
Cow position:
               
chr9:29808397-29808722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
125, 19
               

               
Conread position:
               
161-485
               

               
Cow position:
               
chr9:32676619-32676947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
161-486
               

               
Cow position:
               
chr9:8599549-8599865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
211, 45
               

               
Conread position:
               
162-309
               

               
Cow position:
               
chr9:21384005-21383862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
162-485
               

               
Cow position:
               
chr9:44552690-44553008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
148, 23
               

               
Conread position:
               
162-486
               

               
Cow position:
               
chr9:16745617-16745939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
73, 9
               

               
Conread position:
               
162-486
               

               
Cow position:
               
chr9:52725274-52724954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 24
               

               
Conread position:
               
163-482
               

               
Cow position:
               
chr9:6089033-6089355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 29
               

               
Conread position:
               
163-486
               

               
Cow position:
               
chr9:20989514-20989192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 124
               

               
Conread position:
               
163-486
               

               
Cow position:
               
chr9:31777749-31777429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
163-486
               

               
Cow position:
               
chr9:62399906-62400218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
65, 126
               

               
Conread position:
               
165-486
               

               
Cow position:
               
chr9:19637682-19637376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
126, 55
               

               
Conread position:
               
165-486
               

               
Cow position:
               
chr9:23541445-23541156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
146, 25
               

               
Conread position:
               
165-486
               

               
Cow position:
               
chr9:50296087-50295761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
42, 36
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chr9:47591034-47590802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
108, 141
               

               
Conread position:
               
166-425
               

               
Cow position:
               
chr9:47500265-47500002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
166-468
               

               
Cow position:
               
chr9:32815599-32815882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
144, 113
               

               
Conread position:
               
166-473
               

               
Cow position:
               
chr9:38615015-38614717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
121, 45
               

               
Conread position:
               
166-482
               

               
Cow position:
               
chr9:24726718-24726420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
201, 71
               

               
Conread position:
               
166-486
               

               
Cow position:
               
chr9:647724-648037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
110, 126
               

               
Conread position:
               
166-486
               

               
Cow position:
               
chr9:5268500-5268818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
85, 50
               

               
Conread position:
               
166-486
               

               
Cow position:
               
chr9:31077723-31077416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
95, 103
               

               
Conread position:
               
170-360
               

               
Cow position:
               
chr9:60080853-60081048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
73, 40
               

               
Conread position:
               
171-486
               

               
Cow position:
               
chr9:11068519-11068207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
77, 49
               

               
Conread position:
               
171-486
               

               
Cow position:
               
chr9:22114683-22114371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 59
               

               
Conread position:
               
171-486
               

               
Cow position:
               
chr9:35375378-35375686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 28
               

               
Conread position:
               
171-486
               

               
Cow position:
               
chr9:53258102-53257798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
172-478
               

               
Cow position:
               
chr9:25546593-25546888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 102
               

               
Conread position:
               
172-486
               

               
Cow position:
               
chr9:35904792-35904489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 189
               

               
Conread position:
               
173-486
               

               
Cow position:
               
chr9:43207420-43207117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
87, 94
               

               
Conread position:
               
173-486
               

               
Cow position:
               
chr9:63905653-63905342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
139, 110
               

               
Conread position:
               
176-356
               

               
Cow position:
               
chr9:51131417-51131601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
176-359
               

               
Cow position:
               
chr9:8306811-8306993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
130, 98
               

               
Conread position:
               
176-425
               

               
Cow position:
               
chr9:52638210-52637955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
91, 192
               

               
Conread position:
               
176-473
               

               
Cow position:
               
chr9:48107159-48106870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
99, 104
               

               
Conread position:
               
176-486
               

               
Cow position:
               
chr9:49983132-49982835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 100
               

               
Conread position:
               
178-486
               

               
Cow position:
               
chr9:41789243-41789540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 171
               

               
Conread position:
               
179-390
               

               
Cow position:
               
chr9:50202533-50202739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
179-405
               

               
Cow position:
               
chr9:1370888-1371121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
179-450
               

               
Cow position:
               
chr9:8317488-8317236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
182-403
               

               
Cow position:
               
chr9:27029742-27029521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
104, 159
               

               
Conread position:
               
182-406
               

               
Cow position:
               
chr9:16121131-16121354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
91, 170
               

               
Conread position:
               
182-407
               

               
Cow position:
               
chr9:41518663-41518431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
182-444
               

               
Cow position:
               
chr9:26440849-26440576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
182-454
               

               
Cow position:
               
chr9:1916250-1916517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
120, 179
               

               
Conread position:
               
182-471
               

               
Cow position:
               
chr9:61492995-61493274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
128, 91
               

               
Conread position:
               
182-482
               

               
Cow position:
               
chr9:5531562-5531861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
125, 179
               

               
Conread position:
               
182-482
               

               
Cow position:
               
chr9:10965905-10966201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
92, 113
               

               
Conread position:
               
182-482
               

               
Cow position:
               
chr9:15983109-15982821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
129, 97
               

               
Conread position:
               
182-483
               

               
Cow position:
               
chr9:19504586-19504882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
22, 35
               

               
Conread position:
               
182-486
               

               
Cow position:
               
chr9:8997523-8997818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
129, 84
               

               
Conread position:
               
182-486
               

               
Cow position:
               
chr9:20681443-20681145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
80, 225
               

               
Conread position:
               
185-466
               

               
Cow position:
               
chr9:62134658-62134378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
98, 27
               

               
Conread position:
               
185-486
               

               
Cow position:
               
chr9:8950870-8951165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
98, 161
               

               
Conread position:
               
187-356
               

               
Cow position:
               
chr9:43013690-43013862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
86, 23
               

               
Conread position:
               
187-486
               

               
Cow position:
               
chr9:10127700-10127406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 19
               

               
Conread position:
               
190-439
               

               
Cow position:
               
chr9:30162127-30162375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
84, 171
               

               
Conread position:
               
190-486
               

               
Cow position:
               
chr9:35849875-35850161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 95
               

               
Conread position:
               
190-486
               

               
Cow position:
               
chr9:36827106-36827387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
96, 80
               

               
Conread position:
               
190-486
               

               
Cow position:
               
chr9:38343861-38344156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 24
               

               
Conread position:
               
191-482
               

               
Cow position:
               
chr9:9416423-9416149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 25
               

               
Conread position:
               
192-486
               

               
Cow position:
               
chr9:35533980-35533689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 178
               

               
Conread position:
               
196-397
               

               
Cow position:
               
chr9:41853409-41853619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
198-450
               

               
Cow position:
               
chr9:3371546-3371805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
103, 76
               

               
Conread position:
               
198-468
               

               
Cow position:
               
chr9:35202855-35203128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
198-483
               

               
Cow position:
               
chr9:27697749-27697471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
198-483
               

               
Cow position:
               
chr9:28735467-28735738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
108, 80
               

               
Conread position:
               
198-486
               

               
Cow position:
               
chr9:3387668-3387952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 165
               

               
Conread position:
               
198-486
               

               
Cow position:
               
chr9:5029488-5029777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
80, 176
               

               
Conread position:
               
198-486
               

               
Cow position:
               
chr9:22360989-22361276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
80, 145
               

               
Conread position:
               
198-486
               

               
Cow position:
               
chr9:25958396-25958676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
51, 83
               

               
Conread position:
               
199-445
               

               
Cow position:
               
chr9:26115924-26115677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
105, 37
               

               
Conread position:
               
199-486
               

               
Cow position:
               
chr9:1952290-1952007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 164
               

               
Conread position:
               
204-486
               

               
Cow position:
               
chr9:49983705-49983430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
14, 73
               

               
Conread position:
               
205-461
               

               
Cow position:
               
chr9:50703125-50702875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
77, 88
               

               
Conread position:
               
205-486
               

               
Cow position:
               
chr9:8869157-8868874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
87, 128
               

               
Conread position:
               
205-486
               

               
Cow position:
               
chr9:29108523-29108799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
65, 13
               

               
Conread position:
               
206-486
               

               
Cow position:
               
chr9:6225468-6225190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 165
               

               
Conread position:
               
207-455
               

               
Cow position:
               
chr9:33038473-33038227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
68, 24
               

               
Conread position:
               
208-472
               

               
Cow position:
               
chr9:34742735-34742480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
70, 125
               

               
Conread position:
               
208-486
               

               
Cow position:
               
chr9:3725076-3724799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 63
               

               
Conread position:
               
208-486
               

               
Cow position:
               
chr9:20961291-20961026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
67, 97
               

               
Conread position:
               
209-468
               

               
Cow position:
               
chr9:29091779-29092048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
13, 179
               

               
Conread position:
               
209-486
               

               
Cow position:
               
chr9:18163170-18162894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
18, 115
               

               
Conread position:
               
210-412
               

               
Cow position:
               
chr9:43048628-43048434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
101, 68
               

               
Conread position:
               
211-486
               

               
Cow position:
               
chr9:58669368-58669642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
213-455
               

               
Cow position:
               
chr9:32710923-32711163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
94, 146
               

               
Conread position:
               
215-486
               

               
Cow position:
               
chr9:4128785-4128522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
96, 75
               

               
Conread position:
               
216-413
               

               
Cow position:
               
chr9:40543328-40543129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
75, 138
               

               
Conread position:
               
216-455
               

               
Cow position:
               
chr9:1084864-1084624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 79
               

               
Conread position:
               
216-469
               

               
Cow position:
               
chr9:35360107-35359857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
55, 77
               

               
Conread position:
               
216-485
               

               
Cow position:
               
chr9:5399733-5399980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
95, 62
               

               
Conread position:
               
216-486
               

               
Cow position:
               
chr9:3192685-3192416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
91, 145
               

               
Conread position:
               
217-416
               

               
Cow position:
               
chr9:55893054-55893252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
93, 144
               

               
Conread position:
               
217-478
               

               
Cow position:
               
chr9:2022692-2022948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
218-407
               

               
Cow position:
               
chr9:31270778-31270966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
9, 68
               

               
Conread position:
               
218-438
               

               
Cow position:
               
chr9:29578247-29578458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
89, 20
               

               
Conread position:
               
218-482
               

               
Cow position:
               
chr9:5531941-5532211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 159
               

               
Conread position:
               
219-364
               

               
Cow position:
               
chr9:18029405-18029247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
222-439
               

               
Cow position:
               
chr9:30195217-30195428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
64, 114
               

               
Conread position:
               
222-482
               

               
Cow position:
               
chr9:1997140-1997390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
56, 88
               

               
Conread position:
               
222-486
               

               
Cow position:
               
chr9:16538812-16538545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
89, 57
               

               
Conread position:
               
222-486
               

               
Cow position:
               
chr9:30749586-30749323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
222-486
               

               
Cow position:
               
chr9:34919257-34919004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
88, 68
               

               
Conread position:
               
222-486
               

               
Cow position:
               
chr9:40105470-40105739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 70
               

               
Conread position:
               
222-486
               

               
Cow position:
               
chr9:54611233-54610969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
53, 35
               

               
Conread position:
               
222-486
               

               
Cow position:
               
chr9:54998026-54997761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
89, 148
               

               
Conread position:
               
223-388
               

               
Cow position:
               
chr9:9090361-9090186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
223-480
               

               
Cow position:
               
chr9:10092390-10092138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
55, 76
               

               
Conread position:
               
223-482
               

               
Cow position:
               
chr9:16086260-16086518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
67, 85
               

               
Conread position:
               
225-413
               

               
Cow position:
               
chr9:29330646-29330448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
50, 146
               

               
Conread position:
               
225-486
               

               
Cow position:
               
chr9:20811059-20810799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
62, 94
               

               
Conread position:
               
226-486
               

               
Cow position:
               
chr9:26390776-26391030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
226-486
               

               
Cow position:
               
chr9:29035029-29034777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
55, 147
               

               
Conread position:
               
226-486
               

               
Cow position:
               
chr9:33388893-33388646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
15, 38
               

               
Conread position:
               
227-451
               

               
Cow position:
               
chr9:1532318-1532105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 8
               

               
Conread position:
               
228-363
               

               
Cow position:
               
chr9:11377935-11377796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
228-482
               

               
Cow position:
               
chr9:59172371-59172120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
78, 17
               

               
Conread position:
               
228-486
               

               
Cow position:
               
chr9:1712467-1712223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
59, 42
               

               
Conread position:
               
229-486
               

               
Cow position:
               
chr9:28773131-28773379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
56, 139
               

               
Conread position:
               
230-397
               

               
Cow position:
               
chr9:51735588-51735418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
80, 59
               

               
Conread position:
               
230-412
               

               
Cow position:
               
chr9:1879391-1879568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
47, 72
               

               
Conread position:
               
230-486
               

               
Cow position:
               
chr9:53602438-53602675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
50, 44
               

               
Conread position:
               
230-486
               

               
Cow position:
               
chr9:64517090-64516834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 104
               

               
Conread position:
               
231-392
               

               
Cow position:
               
chr9:4324145-4323986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
80, 130
               

               
Conread position:
               
231-412
               

               
Cow position:
               
chr9:3847680-3847860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 98
               

               
Conread position:
               
231-443
               

               
Cow position:
               
chr9:6118137-6117928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
55, 42
               

               
Conread position:
               
231-486
               

               
Cow position:
               
chr9:19541917-19542171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
231-486
               

               
Cow position:
               
chr9:23027816-23028056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
52, 102
               

               
Conread position:
               
232-467
               

               
Cow position:
               
chr9:40603958-40604193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 53
               

               
Conread position:
               
232-482
               

               
Cow position:
               
chr9:17785443-17785203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
79, 49
               

               
Conread position:
               
232-486
               

               
Cow position:
               
chr9:20738709-20738964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
40, 168
               

               
Conread position:
               
234-450
               

               
Cow position:
               
chr9:58734383-58734601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
43, 56
               

               
Conread position:
               
235-472
               

               
Cow position:
               
chr9:25657525-25657762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
34, 51
               

               
Conread position:
               
235-473
               

               
Cow position:
               
chr9:34000604-34000367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 53
               

               
Conread position:
               
235-482
               

               
Cow position:
               
chr9:27077226-27076993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
74, 40
               

               
Conread position:
               
235-486
               

               
Cow position:
               
chr9:37000045-36999799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
40, 106
               

               
Conread position:
               
235-486
               

               
Cow position:
               
chr9:57951305-57951067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
76, 36
               

               
Conread position:
               
236-412
               

               
Cow position:
               
chr9:14358180-14358354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
76, 55
               

               
Conread position:
               
236-453
               

               
Cow position:
               
chr9:50667438-50667653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
42, 128
               

               
Conread position:
               
237-430
               

               
Cow position:
               
chr9:28452139-28451947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
237-486
               

               
Cow position:
               
chr9:18002936-18002687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 185
               

               
Conread position:
               
239-395
               

               
Cow position:
               
chr9:5069086-5069249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 34
               

               
Conread position:
               
239-472
               

               
Cow position:
               
chr9:62361215-62360981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
36, 131
               

               
Conread position:
               
239-486
               

               
Cow position:
               
chr9:22228059-22227824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
71, 16
               

               
Conread position:
               
239-486
               

               
Cow position:
               
chr9:35306098-35305858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
43, 123
               

               
Conread position:
               
241-412
               

               
Cow position:
               
chr9:49279486-49279666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
40, 127
               

               
Conread position:
               
241-442
               

               
Cow position:
               
chr9:51011514-51011322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
70, 31
               

               
Conread position:
               
241-444
               

               
Cow position:
               
chr9:41469844-41469638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 131
               

               
Conread position:
               
241-486
               

               
Cow position:
               
chr9:32812371-32812610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 38
               

               
Conread position:
               
242-412
               

               
Cow position:
               
chr9:1909358-1909192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
65, 47
               

               
Conread position:
               
242-437
               

               
Cow position:
               
chr9:11198320-11198129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
29, 49
               

               
Conread position:
               
242-482
               

               
Cow position:
               
chr9:51891515-51891753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
69, 7
               

               
Conread position:
               
245-483
               

               
Cow position:
               
chr9:12428484-12428249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
41, 86
               

               
Conread position:
               
247-468
               

               
Cow position:
               
chr9:51004922-51005131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 51
               

               
Conread position:
               
247-486
               

               
Cow position:
               
chr9:58439754-58439519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
25, 116
               

               
Conread position:
               
248-486
               

               
Cow position:
               
chr9:37528480-37528718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 57
               

               
Conread position:
               
249-482
               

               
Cow position:
               
chr9:60037680-60037914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
34, 26
               

               
Conread position:
               
252-486
               

               
Cow position:
               
chr9:4928658-4928893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
23, 105
               

               
Conread position:
               
252-486
               

               
Cow position:
               
chr9:36066938-36067168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 120
               

               
Conread position:
               
253-486
               

               
Cow position:
               
chr9:16182453-16182228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
253-486
               

               
Cow position:
               
chr9:30664746-30664516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
58, 20
               

               
Conread position:
               
254-456
               

               
Cow position:
               
chr9:31292724-31292920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 113
               

               
Conread position:
               
257-486
               

               
Cow position:
               
chr9:8546362-8546580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
53, 26
               

               
Conread position:
               
258-486
               

               
Cow position:
               
chr9:1984485-1984259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
49, 26
               

               
Conread position:
               
259-486
               

               
Cow position:
               
chr9:42998431-42998209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
21, 106
               

               
Conread position:
               
262-486
               

               
Cow position:
               
chr9:16218606-16218381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
18, 67
               

               
Conread position:
               
269-485
               

               
Cow position:
               
chr9:34093384-34093164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
269-486
               

               
Cow position:
               
chr9:17634783-17634569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
42, 59
               

               
Conread position:
               
269-486
               

               
Cow position:
               
chr9:27052284-27052071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
269-486
               

               
Cow position:
               
chr9:58673789-58674003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 59
               

               
Conread position:
               
271-486
               

               
Cow position:
               
chr9:5621981-5621768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
279-486
               

               
Cow position:
               
chr9:42585572-42585364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
7, 97
               

               
Conread position:
               
280-486
               

               
Cow position:
               
chr9:48343664-48343865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
27, 11
               

               
Conread position:
               
281-482
               

               
Cow position:
               
chr9:36623381-36623194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
281-486
               

               
Cow position:
               
chr9:41995772-41995976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
30, 87
               

               
Conread position:
               
282-480
               

               
Cow position:
               
chr9:45171103-45170913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 86
               

               
Conread position:
               
284-482
               

               
Cow position:
               
chr9:8612347-8612545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
26, 60
               

               
Conread position:
               
284-486
               

               
Cow position:
               
chr9:34762782-34762588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
284-486
               

               
Cow position:
               
chr9:53608329-53608132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
26, 83
               

               
Conread position:
               
285-486
               

               
Cow position:
               
chr9:26577788-26577598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 39
               

               
Conread position:
               
285-486
               

               
Cow position:
               
chr9:30189163-30189362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 58
               

               
Conread position:
               
285-486
               

               
Cow position:
               
chr9:33847010-33846811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
52, 25
               

               
Conread position:
               
286-482
               

               
Cow position:
               
chr9:38875509-38875316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
287-486
               

               
Cow position:
               
chr9:1855335-1855542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
113, 20
               

               
Conread position:
               
288-486
               

               
Cow position:
               
chr9:9490862-9491055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
289-482
               

               
Cow position:
               
chr9:41652856-41653047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
290-473
               

               
Cow position:
               
chr9:41412240-41412064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
20, 53
               

               
Conread position:
               
299-482
               

               
Cow position:
               
chr9:10877791-10877608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
11, 100
               

               
Conread position:
               
301-486
               

               
Cow position:
               
chr9:3594448-3594264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
9, 55
               

               
Conread position:
               
301-486
               

               
Cow position:
               
chr9:8600411-8600598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 125
               

               
Conread position:
               
302-484
               

               
Cow position:
               
chr9:25502460-25502278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
8, 58
               

               
Conread position:
               
303-485
               

               
Cow position:
               
chr9:26310640-26310819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
309-462
               

               
Cow position:
               
chr9:5238483-5238634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
20, 10
               

               
Conread position:
               
311-486
               

               
Cow position:
               
chr9:25969437-25969607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
312-486
               

               
Cow position:
               
chr9:22616719-22616885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
315-486
               

               
Cow position:
               
chr9:31662561-31662732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
319-485
               

               
Cow position:
               
chr9:975107-975276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
89, 41
               

               
Conread position:
               
319-486
               

               
Cow position:
               
chr9:1350345-1350184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
320-468
               

               
Cow position:
               
chr9:33823201-33823342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
329-469
               

               
Cow position:
               
chr9:2977487-2977627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 30
               

               
Conread position:
               
329-482
               

               
Cow position:
               
chr9:18008752-18008609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
333-486
               

               
Cow position:
               
chr9:37510128-37510279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
16, 123
               

               
Conread position:
               
338-486
               

               
Cow position:
               
chr9:20465596-20465451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
348-486
               

               
Cow position:
               
chr9:32787979-32787845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
97, 20
               

               
Conread position:
               
360-482
               

               
Cow position:
               
chr9:58451961-58451839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
361-486
               

               
Cow position:
               
chr9:54178111-54177987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
362-486
               

               
Cow position:
               
chr9:40060189-40060065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
362-486
               

               
Cow position:
               
chr9:54666045-54666167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
363-486
               

               
Cow position:
               
chr9:13993803-13993926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
364-478
               

               
Cow position:
               
chr9:51557222-51557108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
368-486
               

               
Cow position:
               
chr9:49689084-49689198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               
Show alignments to all cow chromosomes.