Cow genome map

Conread name: unkn-MI-P-NA-aeq-c-03-1-UM.s1

Conread position: 1-111
Cow position: chr1:84226891-84226780 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 1-175
Cow position: chr1:31365015-31365182 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 1-176
Cow position: chr1:17940714-17940883 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 110, 118

Conread position: 1-180
Cow position: chr1:99018926-99019099 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 121, 0

Conread position: 1-184
Cow position: chr1:58882699-58882876 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 110, 116

Conread position: 1-236
Cow position: chr1:57697081-57697310 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 19, 120

Conread position: 1-269
Cow position: chr1:70419297-70419545 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 1-397
Cow position: chr1:32908902-32908534 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 267
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 277, 79

Conread position: 1-447
Cow position: chr1:25551046-25550611 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 122

Conread position: 1-447
Cow position: chr1:33552011-33551576 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 113

Conread position: 1-447
Cow position: chr1:58336921-58336488 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 121

Conread position: 1-447
Cow position: chr1:72081850-72081416 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 37

Conread position: 1-447
Cow position: chr1:99914510-99914073 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 122

Conread position: 1-453
Cow position: chr1:62805096-62805533 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 122

Conread position: 1-458
Cow position: chr1:22843724-22843280 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 101

Conread position: 1-460
Cow position: chr1:30063457-30063041 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 324
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 278, 108

Conread position: 2-176
Cow position: chr1:55155918-55156087 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 21, 112

Conread position: 2-447
Cow position: chr1:6195318-6194884 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 121

Conread position: 2-447
Cow position: chr1:8826131-8825699 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 112

Conread position: 2-447
Cow position: chr1:98658824-98659255 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 302
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 18, 121

Conread position: 3-176
Cow position: chr1:77115620-77115788 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 18, 121

Conread position: 3-388
Cow position: chr1:39539856-39540217 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 254
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 71, 78

Conread position: 3-447
Cow position: chr1:31417422-31417864 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 193

Conread position: 3-459
Cow position: chr1:88131856-88131414 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 120

Conread position: 3-460
Cow position: chr1:80358095-80358544 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 380, 120

Conread position: 4-385
Cow position: chr1:18139377-18139732 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 255
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 275, 48

Conread position: 5-423
Cow position: chr1:88269152-88269560 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 287
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 20, 14

Conread position: 7-176
Cow position: chr1:3934182-3934346 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 114

Conread position: 7-176
Cow position: chr1:32662804-32662643 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 91, 0

Conread position: 7-176
Cow position: chr1:73197946-73198110 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 48, 117

Conread position: 7-447
Cow position: chr1:48246915-48246482 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 117

Conread position: 7-447
Cow position: chr1:49973109-49973538 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 107

Conread position: 8-184
Cow position: chr1:57972629-57972799 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 113, 0

Conread position: 8-447
Cow position: chr1:62243566-62243990 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 115

Conread position: 8-453
Cow position: chr1:44100322-44100749 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 18

Conread position: 8-460
Cow position: chr1:63502902-63502472 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 374, 67

Conread position: 9-180
Cow position: chr1:67292706-67292541 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 9-447
Cow position: chr1:39544867-39544419 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 291
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 37, 27

Conread position: 9-447
Cow position: chr1:63604697-63605126 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 114

Conread position: 10-447
Cow position: chr1:42737533-42737108 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 113

Conread position: 10-447
Cow position: chr1:52358183-52358622 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 116

Conread position: 10-447
Cow position: chr1:69921359-69921785 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 113

Conread position: 10-447
Cow position: chr1:93855592-93855169 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 113

Conread position: 11-329
Cow position: chr1:74285715-74286010 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 219
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 9, 103

Conread position: 12-447
Cow position: chr1:56143263-56143682 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 110

Conread position: 18-172
Cow position: chr1:101860998-101861144 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 186-447
Cow position: chr1:22905678-22905416 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 183

Conread position: 186-460
Cow position: chr1:57662947-57662662 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 228

Conread position: 189-453
Cow position: chr1:56164467-56164193 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 193
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 90, 11

Conread position: 190-434
Cow position: chr1:9259396-9259162 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 173
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 77, 10

Conread position: 190-434
Cow position: chr1:20829828-20829576 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 89, 10

Conread position: 190-434
Cow position: chr1:69767372-69767120 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 175
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 89, 10

Conread position: 190-434
Cow position: chr1:82653581-82653331 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 171
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 190, 10

Conread position: 190-447
Cow position: chr1:28711809-28711539 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 196
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 43, 10

Conread position: 190-447
Cow position: chr1:33852204-33851935 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 89, 0

Conread position: 190-447
Cow position: chr1:33896660-33896392 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 190
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 48, 10

Conread position: 190-447
Cow position: chr1:44044700-44044432 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 195
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chr1:53199456-53199201 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 170
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 190-447
Cow position: chr1:57423923-57424191 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 189
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 48, 10

Conread position: 190-447
Cow position: chr1:60340217-60339949 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 191
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chr1:61310137-61309872 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 189
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chr1:66999929-66999665 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 190
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chr1:71561655-71561923 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 188
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chr1:82565420-82565153 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 188
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 197, 10

Conread position: 190-447
Cow position: chr1:86547224-86547489 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 192
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chr1:89426490-89426223 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 89, 10

Conread position: 190-451
Cow position: chr1:56490768-56490501 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 190
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 91, 10

Conread position: 190-453
Cow position: chr1:8555246-8554975 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 195
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 89, 10

Conread position: 190-453
Cow position: chr1:13451122-13450848 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 89, 10

Conread position: 190-459
Cow position: chr1:5356044-5355764 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 198
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 89, 10

Conread position: 190-460
Cow position: chr1:31397609-31397329 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 197
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 94, 10

Conread position: 192-447
Cow position: chr1:56724072-56723808 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 186
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 46, 54

Conread position: 192-447
Cow position: chr1:85792594-85792332 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 184
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 87, 8

Conread position: 194-459
Cow position: chr1:40575130-40574851 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 10, 0

Conread position: 195-447
Cow position: chr1:29363211-29362947 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 183
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 76, 0

Conread position: 200-447
Cow position: chr1:89769803-89770057 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 79, 18

Conread position: 200-462
Cow position: chr1:33713003-33712729 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 190
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 59, 0

Conread position: 200-469
Cow position: chr1:59648203-59647941 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 181
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 84, 154

Conread position: 202-447
Cow position: chr1:18241613-18241862 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 173
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 77, 24

Conread position: 203-447
Cow position: chr1:49495319-49495575 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 182
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 76, 0

Conread position: 203-449
Cow position: chr1:31328590-31328840 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 174
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 72, 9

Conread position: 212-447
Cow position: chr1:31365193-31365437 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 175
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 70, 0

Conread position: 213-447
Cow position: chr1:88563911-88564151 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 66, 8

Conread position: 215-434
Cow position: chr1:95240262-95240034 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 168
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 64, 0

Conread position: 233-455
Cow position: chr1:85779562-85779796 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 171
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 46, 0

Conread position: 243-459
Cow position: chr1:40054220-40053992 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 36, 0

Conread position: 243-460
Cow position: chr1:21356020-21356244 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 36, 48

Conread position: 270-447
Cow position: chr1:99630719-99630894 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 106, 39

Conread position: 272-447
Cow position: chr1:20422893-20423080 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 278-447
Cow position: chr1:47541455-47541282 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 118, 0

Conread position: 278-460
Cow position: chr1:82367014-82366821 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 104, 0

Show alignments to all cow chromosomes.