Cow genome map
| Conread name: | unkn-MI-P-NA-aeq-c-03-1-UM.s1 |
| Conread position: | 1-118 |
| Cow position: | chr10:22583916-22584033 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-176 |
| Cow position: | chr10:42752237-42752068 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 1-179 |
| Cow position: | chr10:24976663-24976834 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-183 |
| Cow position: | chr10:64146035-64145861 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 82 |
| Conread position: | 1-186 |
| Cow position: | chr10:14842888-14842711 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1-316 |
| Cow position: | chr10:39898450-39898740 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 278, 109 |
| Conread position: | 1-386 |
| Cow position: | chr10:39779014-39779374 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 277, 123 |
| Conread position: | 1-447 |
| Cow position: | chr10:39040201-39040631 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 121 |
| Conread position: | 1-447 |
| Cow position: | chr10:39879254-39879683 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 109 |
| Conread position: | 1-459 |
| Cow position: | chr10:11821860-11821433 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 315 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 1-459 |
| Cow position: | chr10:21078749-21078298 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 71 |
| Conread position: | 2-447 |
| Cow position: | chr10:22102344-22101911 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 120 |
| Conread position: | 4-447 |
| Cow position: | chr10:279504-279935 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 308 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 272, 119 |
| Conread position: | 4-447 |
| Cow position: | chr10:7280986-7281415 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 119 |
| Conread position: | 4-447 |
| Cow position: | chr10:8291083-8290651 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 114 |
| Conread position: | 7-447 |
| Cow position: | chr10:21488019-21487594 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 75 |
| Conread position: | 8-180 |
| Cow position: | chr10:24311266-24311433 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 92, 115 |
| Conread position: | 8-400 |
| Cow position: | chr10:38849402-38849010 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 12, 116 |
| Conread position: | 8-447 |
| Cow position: | chr10:40151145-40151573 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 12, 112 |
| Conread position: | 8-462 |
| Cow position: | chr10:21481033-21480582 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 307 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 75, 106 |
| Conread position: | 9-184 |
| Cow position: | chr10:57501918-57501750 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 93, 100 |
| Conread position: | 10-175 |
| Cow position: | chr10:125490-125331 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 11-460 |
| Cow position: | chr10:8326223-8326633 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 18-176 |
| Cow position: | chr10:17433441-17433283 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 59, 111 |
| Conread position: | 186-447 |
| Cow position: | chr10:2120067-2120338 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 93, 58 |
| Conread position: | 190-432 |
| Cow position: | chr10:57556399-57556649 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 76, 16 |
| Conread position: | 190-434 |
| Cow position: | chr10:39180730-39180479 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr10:11684705-11684973 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr10:11699184-11698916 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr10:14804775-14804507 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr10:19840621-19840354 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr10:21399731-21399998 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr10:34286198-34285930 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr10:39815598-39815866 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 48, 10 |
| Conread position: | 190-447 |
| Cow position: | chr10:55094207-55093939 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-451 |
| Cow position: | chr10:47907871-47907603 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-453 |
| Cow position: | chr10:19495340-19495612 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 92, 10 |
| Conread position: | 190-453 |
| Cow position: | chr10:21730907-21731180 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-459 |
| Cow position: | chr10:28642474-28642194 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-460 |
| Cow position: | chr10:41568040-41567762 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 197-447 |
| Cow position: | chr10:41877853-41877593 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 13, 123 |
| Conread position: | 200-447 |
| Cow position: | chr10:26597546-26597291 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 71, 134 |
| Conread position: | 200-447 |
| Cow position: | chr10:29631839-29632094 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 79, 99 |
| Conread position: | 203-446 |
| Cow position: | chr10:19714636-19714891 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 222-436 |
| Cow position: | chr10:42749745-42749522 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 244-447 |
| Cow position: | chr10:64301885-64302089 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 35, 110 |
| Conread position: | 244-455 |
| Cow position: | chr10:9593070-9593290 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 35, 115 |
| Conread position: | 272-447 |
| Cow position: | chr10:5848767-5848954 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 272-447 |
| Cow position: | chr10:49991300-49991114 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 36 |
| Conread position: | 272-447 |
| Cow position: | chr10:56065533-56065346 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
Show alignments to all cow chromosomes.