Cow genome map
| Conread name: | unkn-MI-P-NA-aeq-c-03-1-UM.s1 |
| Conread position: | 1-176 |
| Cow position: | chr15:2901786-2901955 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 116 |
| Conread position: | 1-400 |
| Cow position: | chr15:2214206-2214586 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 276 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 159, 46 |
| Conread position: | 1-432 |
| Cow position: | chr15:7837939-7837522 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 299 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 267, 121 |
| Conread position: | 1-447 |
| Cow position: | chr15:2763350-2762934 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 312 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 20, 76 |
| Conread position: | 1-447 |
| Cow position: | chr15:4922839-4922411 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 294 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 1-447 |
| Cow position: | chr15:6155253-6155688 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 1-447 |
| Cow position: | chr15:18332139-18332572 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 314 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 1-447 |
| Cow position: | chr15:44829490-44829055 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 307 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 267, 121 |
| Conread position: | 1-460 |
| Cow position: | chr15:17217568-17218017 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 124 |
| Conread position: | 1-460 |
| Cow position: | chr15:20356232-20356671 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 119 |
| Conread position: | 2-175 |
| Cow position: | chr15:13675190-13675024 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 2-176 |
| Cow position: | chr15:38981413-38981245 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 2-184 |
| Cow position: | chr15:13391377-13391554 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 75, 57 |
| Conread position: | 4-459 |
| Cow position: | chr15:50147771-50147310 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 79, 117 |
| Conread position: | 5-388 |
| Cow position: | chr15:14636255-14635887 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 124 |
| Conread position: | 8-447 |
| Cow position: | chr15:6079433-6079008 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 307 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 249, 36 |
| Conread position: | 8-459 |
| Cow position: | chr15:499437-499000 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 101 |
| Conread position: | 9-176 |
| Cow position: | chr15:32493705-32493867 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 113 |
| Conread position: | 9-182 |
| Cow position: | chr15:51611033-51610865 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 29, 126 |
| Conread position: | 9-447 |
| Cow position: | chr15:18577393-18576971 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 310 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 12, 114 |
| Conread position: | 10-386 |
| Cow position: | chr15:4386441-4386087 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 11-447 |
| Cow position: | chr15:19737369-19737795 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 112 |
| Conread position: | 12-447 |
| Cow position: | chr15:53136541-53136965 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 106 |
| Conread position: | 19-444 |
| Cow position: | chr15:1833782-1834212 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 287 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 58, 107 |
| Conread position: | 53-460 |
| Cow position: | chr15:7965310-7965714 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 226, 70 |
| Conread position: | 178-458 |
| Cow position: | chr15:4926933-4926646 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 208 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 105, 16 |
| Conread position: | 190-434 |
| Cow position: | chr15:1782746-1782494 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 91, 10 |
| Conread position: | 190-434 |
| Cow position: | chr15:11597484-11597736 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr15:2647132-2647399 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr15:4142295-4142563 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr15:4196985-4196717 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr15:18267464-18267732 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr15:20749913-20749645 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 190-447 |
| Cow position: | chr15:28489625-28489893 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 89, 16 |
| Conread position: | 190-447 |
| Cow position: | chr15:36971440-36971172 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-460 |
| Cow position: | chr15:1518631-1518908 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 198 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 193, 10 |
| Conread position: | 192-460 |
| Cow position: | chr15:1773018-1772740 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 191, 14 |
| Conread position: | 197-447 |
| Cow position: | chr15:50123424-50123687 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 162 |
| Conread position: | 200-434 |
| Cow position: | chr15:4962148-4961917 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 79, 51 |
| Conread position: | 200-444 |
| Cow position: | chr15:328925-328681 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 79, 128 |
| Conread position: | 200-447 |
| Cow position: | chr15:3889393-3889134 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 200-447 |
| Cow position: | chr15:4651871-4651623 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 182, 19 |
| Conread position: | 200-447 |
| Cow position: | chr15:4671948-4671693 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 38, 45 |
| Conread position: | 200-447 |
| Cow position: | chr15:9913207-9912944 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 200-447 |
| Cow position: | chr15:32493870-32494129 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 200-453 |
| Cow position: | chr15:17079691-17079954 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 200-458 |
| Cow position: | chr15:9003607-9003878 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 79, 44 |
| Conread position: | 200-459 |
| Cow position: | chr15:4813113-4812843 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 79, 11 |
| Conread position: | 205-460 |
| Cow position: | chr15:6067670-6067930 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 74, 24 |
| Conread position: | 211-460 |
| Cow position: | chr15:7983522-7983779 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 162, 49 |
| Conread position: | 212-447 |
| Cow position: | chr15:32711595-32711348 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 272-447 |
| Cow position: | chr15:789130-789317 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 272-464 |
| Cow position: | chr15:1882064-1882268 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
Show alignments to all cow chromosomes.