Cow genome map
| Conread name: | unkn-MI-P-NA-aeq-c-03-1-UM.s1 |
| Conread position: | 1-215 |
| Cow position: | chr17:20403337-20403132 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 123 |
| Conread position: | 1-379 |
| Cow position: | chr17:42265879-42265531 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 1-447 |
| Cow position: | chr17:6260776-6260334 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 1-447 |
| Cow position: | chr17:24029085-24029518 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 2-180 |
| Cow position: | chr17:13990433-13990608 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 121, 136 |
| Conread position: | 4-460 |
| Cow position: | chr17:20099562-20100002 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 117 |
| Conread position: | 5-176 |
| Cow position: | chr17:150984-151149 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 8-466 |
| Cow position: | chr17:16899398-16899826 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 314 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 270, 115 |
| Conread position: | 9-176 |
| Cow position: | chr17:239258-239092 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 117 |
| Conread position: | 9-411 |
| Cow position: | chr17:2031038-2030653 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 104 |
| Conread position: | 9-447 |
| Cow position: | chr17:11086811-11087238 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 114 |
| Conread position: | 9-453 |
| Cow position: | chr17:3707867-3708293 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 55, 97 |
| Conread position: | 10-184 |
| Cow position: | chr17:4061005-4060837 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 10-447 |
| Cow position: | chr17:1656941-1657364 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 365, 76 |
| Conread position: | 10-447 |
| Cow position: | chr17:6069464-6069041 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 305 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 12-459 |
| Cow position: | chr17:19267921-19268358 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 111 |
| Conread position: | 186-434 |
| Cow position: | chr17:5227375-5227123 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 186-447 |
| Cow position: | chr17:14040280-14040546 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 93, 77 |
| Conread position: | 190-434 |
| Cow position: | chr17:2262857-2262604 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 89, 168 |
| Conread position: | 190-447 |
| Cow position: | chr17:182051-181783 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 47, 10 |
| Conread position: | 190-447 |
| Cow position: | chr17:15436544-15436276 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr17:24782910-24782644 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr17:43989250-43988985 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 190-451 |
| Cow position: | chr17:3655542-3655810 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-455 |
| Cow position: | chr17:15142606-15142887 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 81, 10 |
| Conread position: | 190-459 |
| Cow position: | chr17:8209860-8209580 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-460 |
| Cow position: | chr17:31767289-31767567 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 91, 10 |
| Conread position: | 192-447 |
| Cow position: | chr17:2247319-2247584 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 87, 8 |
| Conread position: | 192-447 |
| Cow position: | chr17:6120462-6120196 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 87, 8 |
| Conread position: | 200-434 |
| Cow position: | chr17:22132969-22132731 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 183, 63 |
| Conread position: | 200-447 |
| Cow position: | chr17:15324572-15324313 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 201-447 |
| Cow position: | chr17:19020314-19020059 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 78, 148 |
| Conread position: | 265-451 |
| Cow position: | chr17:1382140-1382334 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 14, 182 |
| Conread position: | 293-447 |
| Cow position: | chr17:9080790-9080955 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
Show alignments to all cow chromosomes.