Cow genome map
| Conread name: | unkn-MI-P-NA-aeq-c-03-1-UM.s1 |
| Conread position: | 1-164 |
| Cow position: | chr21:27284657-27284500 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 1-173 |
| Cow position: | chr21:36979712-36979874 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-342 |
| Cow position: | chr21:34001474-34001787 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 278, 66 |
| Conread position: | 1-384 |
| Cow position: | chr21:31515121-31515480 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 269 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 19, 114 |
| Conread position: | 2-176 |
| Cow position: | chr21:45782686-45782517 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 2-188 |
| Cow position: | chr21:28985321-28985141 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 100, 121 |
| Conread position: | 3-460 |
| Cow position: | chr21:37149238-37148795 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 119 |
| Conread position: | 4-391 |
| Cow position: | chr21:27069766-27070129 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 118 |
| Conread position: | 6-447 |
| Cow position: | chr21:35144954-35144533 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 17 |
| Conread position: | 7-447 |
| Cow position: | chr21:20743382-20743802 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 81 |
| Conread position: | 8-133 |
| Cow position: | chr21:4096384-4096261 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 8-175 |
| Cow position: | chr21:6624970-6624809 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 107 |
| Conread position: | 8-184 |
| Cow position: | chr21:21222770-21222940 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 34, 95 |
| Conread position: | 9-447 |
| Cow position: | chr21:30275-29850 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 18, 117 |
| Conread position: | 9-447 |
| Cow position: | chr21:1287021-1287447 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 302 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 257, 114 |
| Conread position: | 9-447 |
| Cow position: | chr21:3779965-3779539 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 307 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 11, 114 |
| Conread position: | 10-388 |
| Cow position: | chr21:26402291-26402647 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 114 |
| Conread position: | 10-388 |
| Cow position: | chr21:33253377-33253018 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 10, 82 |
| Conread position: | 10-447 |
| Cow position: | chr21:2882541-2882967 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 114 |
| Conread position: | 11-447 |
| Cow position: | chr21:5840068-5840493 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 112 |
| Conread position: | 46-459 |
| Cow position: | chr21:27150098-27149673 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 85 |
| Conread position: | 177-447 |
| Cow position: | chr21:30598869-30599151 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 102, 15 |
| Conread position: | 181-447 |
| Cow position: | chr21:23603591-23603311 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 24 |
| Conread position: | 186-447 |
| Cow position: | chr21:40270628-40270901 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 186-466 |
| Cow position: | chr21:21519675-21519392 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 204, 81 |
| Conread position: | 190-434 |
| Cow position: | chr21:39426098-39425850 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 89, 16 |
| Conread position: | 190-447 |
| Cow position: | chr21:11452618-11452885 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr21:37046661-37046393 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-453 |
| Cow position: | chr21:12054965-12055234 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-453 |
| Cow position: | chr21:46916714-46916440 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 88, 10 |
| Conread position: | 200-434 |
| Cow position: | chr21:4077863-4077623 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 79, 53 |
| Conread position: | 200-443 |
| Cow position: | chr21:11506627-11506372 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 46 |
| Conread position: | 200-447 |
| Cow position: | chr21:26743158-26743407 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 79, 152 |
| Conread position: | 200-447 |
| Cow position: | chr21:28256463-28256201 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 205-432 |
| Cow position: | chr21:4094528-4094294 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 74, 7 |
Show alignments to all cow chromosomes.