Cow genome map
| Conread name: | unkn-MI-P-NA-aeq-c-03-1-UM.s1 |
| Conread position: | 1-176 |
| Cow position: | chr28:6231694-6231862 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 20, 63 |
| Conread position: | 1-184 |
| Cow position: | chr28:13603751-13603929 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 1-447 |
| Cow position: | chr28:5803118-5802679 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 113 |
| Conread position: | 1-447 |
| Cow position: | chr28:21360564-21360126 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 122 |
| Conread position: | 2-455 |
| Cow position: | chr28:11490387-11490866 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 322 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 49, 186 |
| Conread position: | 2-460 |
| Cow position: | chr28:18146651-18147119 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 318 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 3-388 |
| Cow position: | chr28:7811528-7811180 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 21, 120 |
| Conread position: | 3-447 |
| Cow position: | chr28:13461052-13460618 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 120 |
| Conread position: | 4-176 |
| Cow position: | chr28:2988006-2988173 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 126 |
| Conread position: | 8-175 |
| Cow position: | chr28:8380135-8379967 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 12, 92 |
| Conread position: | 9-175 |
| Cow position: | chr28:1505938-1505778 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 10-172 |
| Cow position: | chr28:17666235-17666392 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 10-181 |
| Cow position: | chr28:5750636-5750802 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 113 |
| Conread position: | 10-184 |
| Cow position: | chr28:22260080-22260249 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 10-384 |
| Cow position: | chr28:10581019-10581369 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 10, 108 |
| Conread position: | 10-447 |
| Cow position: | chr28:1813792-1814218 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 10-447 |
| Cow position: | chr28:26425184-26425600 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 104 |
| Conread position: | 10-447 |
| Cow position: | chr28:32791306-32791729 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 44 |
| Conread position: | 11-447 |
| Cow position: | chr28:5113226-5113650 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 111 |
| Conread position: | 11-447 |
| Cow position: | chr28:5938555-5938130 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 113 |
| Conread position: | 190-447 |
| Cow position: | chr28:2724010-2724278 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr28:14751457-14751190 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr28:24589765-24589498 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 47, 10 |
| Conread position: | 200-447 |
| Cow position: | chr28:7789046-7789301 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 79, 36 |
| Conread position: | 200-447 |
| Cow position: | chr28:17666402-17666656 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 79, 37 |
| Conread position: | 200-447 |
| Cow position: | chr28:24668524-24668269 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 79, 160 |
| Conread position: | 278-453 |
| Cow position: | chr28:10497210-10497381 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 150, 68 |
Show alignments to all cow chromosomes.