Cow genome map
| Conread name: | unkn-MI-P-NA-aeq-c-03-1-UM.s1 |
| Conread position: | 1-176 |
| Cow position: | chr4:5926079-5926247 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-176 |
| Cow position: | chr4:11836896-11837064 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 1-176 |
| Cow position: | chr4:17925197-17925367 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 117 |
| Conread position: | 1-214 |
| Cow position: | chr4:61712841-61713043 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1-384 |
| Cow position: | chr4:6206360-6206003 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 268 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 278, 124 |
| Conread position: | 1-441 |
| Cow position: | chr4:1367390-1367821 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 72 |
| Conread position: | 1-447 |
| Cow position: | chr4:356676-356242 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 314 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 20, 99 |
| Conread position: | 1-447 |
| Cow position: | chr4:10882314-10881882 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 1-447 |
| Cow position: | chr4:61693748-61694195 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 149 |
| Conread position: | 1-460 |
| Cow position: | chr4:48027167-48026725 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 122 |
| Conread position: | 2-176 |
| Cow position: | chr4:31670040-31669870 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 122 |
| Conread position: | 2-180 |
| Cow position: | chr4:44924763-44924930 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 2-388 |
| Cow position: | chr4:1049498-1049858 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 121 |
| Conread position: | 2-447 |
| Cow position: | chr4:13494085-13493651 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 121 |
| Conread position: | 4-175 |
| Cow position: | chr4:57984743-57984577 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 119 |
| Conread position: | 5-433 |
| Cow position: | chr4:34183777-34184191 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 97, 120 |
| Conread position: | 7-172 |
| Cow position: | chr4:33494350-33494192 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 7-176 |
| Cow position: | chr4:31564548-31564711 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 13, 80 |
| Conread position: | 7-363 |
| Cow position: | chr4:22474109-22473781 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 152, 115 |
| Conread position: | 8-128 |
| Cow position: | chr4:967321-967442 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 8-184 |
| Cow position: | chr4:27294560-27294730 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 9-176 |
| Cow position: | chr4:51042532-51042694 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 9-187 |
| Cow position: | chr4:45298326-45298497 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 102 |
| Conread position: | 9-447 |
| Cow position: | chr4:36897132-36896707 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 114 |
| Conread position: | 10-198 |
| Cow position: | chr4:39270644-39270825 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 9, 100 |
| Conread position: | 10-354 |
| Cow position: | chr4:16639369-16639047 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 10-372 |
| Cow position: | chr4:50975390-50975036 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 100 |
| Conread position: | 10-445 |
| Cow position: | chr4:18517657-18517234 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 10-447 |
| Cow position: | chr4:6489605-6490030 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 10-447 |
| Cow position: | chr4:33072062-33072488 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 114 |
| Conread position: | 10-447 |
| Cow position: | chr4:43318884-43319307 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 114 |
| Conread position: | 11-447 |
| Cow position: | chr4:43881863-43881438 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 112 |
| Conread position: | 12-181 |
| Cow position: | chr4:4178025-4177863 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 12-184 |
| Cow position: | chr4:19252201-19252042 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 17-459 |
| Cow position: | chr4:46665266-46664842 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 106 |
| Conread position: | 19-434 |
| Cow position: | chr4:20604472-20604079 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 104 |
| Conread position: | 186-453 |
| Cow position: | chr4:60263560-60263833 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 93, 50 |
| Conread position: | 190-434 |
| Cow position: | chr4:17093266-17093517 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-443 |
| Cow position: | chr4:1930031-1930288 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 48, 10 |
| Conread position: | 190-447 |
| Cow position: | chr4:603615-603347 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr4:16326174-16326442 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr4:32212770-32212500 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 190-451 |
| Cow position: | chr4:5880762-5880498 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-459 |
| Cow position: | chr4:4416671-4416395 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 10 |
| Conread position: | 190-460 |
| Cow position: | chr4:18337463-18337183 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 200-458 |
| Cow position: | chr4:58689501-58689765 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 212-460 |
| Cow position: | chr4:41958705-41958445 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 245-434 |
| Cow position: | chr4:100389-100585 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 307-447 |
| Cow position: | chr4:13548512-13548361 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.