Cow genome map
| Conread name: | unkn-MI-P-NA-aeq-c-03-1-UM.s1 |
| Conread position: | 1-176 |
| Cow position: | chr5:9419204-9419378 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 80 |
| Conread position: | 1-176 |
| Cow position: | chr5:34297805-34297634 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 114 |
| Conread position: | 1-183 |
| Cow position: | chr5:41465936-41465759 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 123 |
| Conread position: | 1-355 |
| Cow position: | chr5:39245949-39246282 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 252 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 20, 124 |
| Conread position: | 1-379 |
| Cow position: | chr5:6154038-6154393 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 260 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 1-447 |
| Cow position: | chr5:10919687-10919253 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 1-447 |
| Cow position: | chr5:57481676-57482111 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 123 |
| Conread position: | 2-447 |
| Cow position: | chr5:3786781-3786350 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 18, 121 |
| Conread position: | 2-447 |
| Cow position: | chr5:30580192-30579755 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 122 |
| Conread position: | 3-176 |
| Cow position: | chr5:54791775-54791942 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 6-160 |
| Cow position: | chr5:13046303-13046155 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 7-185 |
| Cow position: | chr5:26346477-26346306 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 8-254 |
| Cow position: | chr5:40788920-40788693 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 8-308 |
| Cow position: | chr5:27055824-27056104 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 12, 106 |
| Conread position: | 8-460 |
| Cow position: | chr5:18400836-18401286 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 18 |
| Conread position: | 9-178 |
| Cow position: | chr5:53703308-53703471 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 9-386 |
| Cow position: | chr5:32308540-32308892 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 257, 111 |
| Conread position: | 10-447 |
| Cow position: | chr5:7274705-7274259 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 85 |
| Conread position: | 10-447 |
| Cow position: | chr5:49519414-49518991 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 305 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 10-447 |
| Cow position: | chr5:64781162-64781584 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 10-459 |
| Cow position: | chr5:1341179-1341616 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 71 |
| Conread position: | 10-459 |
| Cow position: | chr5:55628845-55628407 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 113 |
| Conread position: | 45-358 |
| Cow position: | chr5:26067079-26067375 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 234, 44 |
| Conread position: | 188-453 |
| Cow position: | chr5:28024207-28023940 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 195, 15 |
| Conread position: | 190-434 |
| Cow position: | chr5:58196711-58196469 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 190-434 |
| Cow position: | chr5:59061309-59061057 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr5:4089763-4089498 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr5:10775573-10775837 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 89, 16 |
| Conread position: | 190-447 |
| Cow position: | chr5:18121786-18122049 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr5:23959620-23959888 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr5:26078503-26078769 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 89, 12 |
| Conread position: | 190-447 |
| Cow position: | chr5:27908579-27908845 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 89, 16 |
| Conread position: | 190-447 |
| Cow position: | chr5:35300794-35300526 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr5:38073727-38073459 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr5:44460178-44459910 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr5:44784218-44784486 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr5:45181449-45181717 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr5:48467585-48467853 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-453 |
| Cow position: | chr5:18664487-18664213 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-459 |
| Cow position: | chr5:42505699-42505419 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-459 |
| Cow position: | chr5:47830376-47830656 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 192-485 |
| Cow position: | chr5:46005159-46005460 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 87, 8 |
| Conread position: | 200-434 |
| Cow position: | chr5:45701001-45700758 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 38, 45 |
| Conread position: | 200-447 |
| Cow position: | chr5:2531941-2531682 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 200-453 |
| Cow position: | chr5:47893852-47894113 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 62, 139 |
| Conread position: | 200-460 |
| Cow position: | chr5:14784680-14784947 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 79, 21 |
| Conread position: | 211-447 |
| Cow position: | chr5:31100952-31101197 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 68, 140 |
| Conread position: | 243-453 |
| Cow position: | chr5:18666637-18666415 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 265-434 |
| Cow position: | chr5:14380763-14380585 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.