Cow genome map

Conread name: unkn-MI-P-NA-aeq-c-03-1-UM.s1

Conread position: 1-176
Cow position: chr6:21973657-21973487 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 19, 122

Conread position: 1-387
Cow position: chr6:13316471-13316832 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 1-388
Cow position: chr6:47042198-47042559 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 272
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 19, 122

Conread position: 1-414
Cow position: chr6:38271892-38271506 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 292
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 19, 123

Conread position: 1-447
Cow position: chr6:6567592-6567163 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 121

Conread position: 2-127
Cow position: chr6:69143625-69143501 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 2-176
Cow position: chr6:51715539-51715370 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 121

Conread position: 2-447
Cow position: chr6:8760288-8760730 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 112

Conread position: 3-379
Cow position: chr6:59918074-59918419 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 259
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 17, 120

Conread position: 3-447
Cow position: chr6:1821624-1822058 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 115

Conread position: 3-447
Cow position: chr6:35875716-35876144 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 386, 119

Conread position: 4-447
Cow position: chr6:27529001-27529432 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 122

Conread position: 5-131
Cow position: chr6:10632554-10632427 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 115, 0

Conread position: 5-175
Cow position: chr6:65842621-65842459 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 41

Conread position: 7-111
Cow position: chr6:1535580-1535685 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 7-172
Cow position: chr6:52694010-52693853 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 8-125
Cow position: chr6:31636419-31636536 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 8-176
Cow position: chr6:58027669-58027506 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 13, 106

Conread position: 8-186
Cow position: chr6:15926589-15926762 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 152, 115

Conread position: 8-193
Cow position: chr6:17244405-17244582 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 114, 0

Conread position: 8-343
Cow position: chr6:31565163-31565472 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 270, 115

Conread position: 8-384
Cow position: chr6:703212-702844 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 66

Conread position: 8-388
Cow position: chr6:3276378-3276736 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 264
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 12, 115

Conread position: 8-399
Cow position: chr6:65940827-65941197 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 260
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 121, 105

Conread position: 8-447
Cow position: chr6:914625-914204 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 88

Conread position: 8-453
Cow position: chr6:28133926-28133504 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 308
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 13, 115

Conread position: 9-175
Cow position: chr6:17047047-17046886 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 11, 115

Conread position: 9-176
Cow position: chr6:43792723-43792883 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 114, 0

Conread position: 9-388
Cow position: chr6:28169898-28169542 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 112

Conread position: 9-396
Cow position: chr6:56042722-56043088 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 14

Conread position: 10-339
Cow position: chr6:34891130-34891437 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 228
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 10, 108

Conread position: 10-386
Cow position: chr6:15278817-15279166 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 258
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 10, 113

Conread position: 10-391
Cow position: chr6:39438759-39438402 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 268
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 11, 113

Conread position: 10-447
Cow position: chr6:15140183-15140613 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 110

Conread position: 11-447
Cow position: chr6:20560109-20560537 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 109

Conread position: 18-187
Cow position: chr6:34443900-34443736 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 106, 61

Conread position: 186-442
Cow position: chr6:69143471-69143216 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 178
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 209, 14

Conread position: 186-447
Cow position: chr6:8203024-8202751 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 194
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 94, 0

Conread position: 186-459
Cow position: chr6:3487582-3487865 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 202
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 204, 84

Conread position: 189-447
Cow position: chr6:43999899-43999630 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 190
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 90, 11

Conread position: 190-434
Cow position: chr6:13944744-13944492 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 89, 10

Conread position: 190-434
Cow position: chr6:16052716-16052465 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 89, 10

Conread position: 190-444
Cow position: chr6:43618552-43618287 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 184
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chr6:185632-185900 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chr6:7140626-7140893 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chr6:27170411-27170149 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 191
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chr6:40252497-40252230 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 193
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chr6:40275924-40275657 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 90, 10

Conread position: 190-447
Cow position: chr6:44149720-44149987 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 185
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 89, 10

Conread position: 190-455
Cow position: chr6:330630-330905 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 92, 10

Conread position: 190-459
Cow position: chr6:12665483-12665762 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 197
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 89, 10

Conread position: 190-462
Cow position: chr6:13847863-13847585 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 196
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 89, 142

Conread position: 191-447
Cow position: chr6:2375534-2375270 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 192
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 47, 9

Conread position: 196-441
Cow position: chr6:40325851-40326108 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 181
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 83, 123

Conread position: 196-460
Cow position: chr6:40316212-40315944 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 189
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 42, 53

Conread position: 200-466
Cow position: chr6:28490740-28491010 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 7, 135

Conread position: 272-434
Cow position: chr6:69221454-69221625 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 7, 0

Conread position: 272-447
Cow position: chr6:33488-33301 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 0

Conread position: 272-447
Cow position: chr6:3048510-3048697 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 272-447
Cow position: chr6:10498968-10499155 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 0

Conread position: 272-447
Cow position: chr6:24322625-24322812 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 0

Show alignments to all cow chromosomes.