Cow genome map
| Conread name: | unkn-MI-P-NA-aeq-c-03-1-UM.s1 |
| Conread position: | 1-118 |
| Cow position: | chr7:25251237-25251119 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 75 |
| Conread position: | 1-127 |
| Cow position: | chr7:19046643-19046767 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 1-175 |
| Cow position: | chr7:33332654-33332485 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 1-176 |
| Cow position: | chr7:1609552-1609721 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 111, 116 |
| Conread position: | 1-445 |
| Cow position: | chr7:40268874-40269309 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 292 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 60, 254 |
| Conread position: | 1-453 |
| Cow position: | chr7:41875178-41875616 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 321 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 50, 135 |
| Conread position: | 1-460 |
| Cow position: | chr7:23837665-23837221 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 113 |
| Conread position: | 2-356 |
| Cow position: | chr7:42871234-42870905 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 121 |
| Conread position: | 2-388 |
| Cow position: | chr7:30118441-30118802 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 280 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 29, 74 |
| Conread position: | 2-447 |
| Cow position: | chr7:38397908-38397474 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 121 |
| Conread position: | 2-447 |
| Cow position: | chr7:61578548-61578114 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 112 |
| Conread position: | 3-314 |
| Cow position: | chr7:3156561-3156267 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 17, 122 |
| Conread position: | 3-386 |
| Cow position: | chr7:20533051-20532694 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 27 |
| Conread position: | 4-176 |
| Cow position: | chr7:45948053-45948220 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 119 |
| Conread position: | 5-146 |
| Cow position: | chr7:49829537-49829672 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 5-453 |
| Cow position: | chr7:21233923-21234357 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 54 |
| Conread position: | 7-175 |
| Cow position: | chr7:24807369-24807532 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 116 |
| Conread position: | 7-180 |
| Cow position: | chr7:48635512-48635345 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 7-447 |
| Cow position: | chr7:526062-525635 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 24 |
| Conread position: | 8-130 |
| Cow position: | chr7:68438857-68438735 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-164 |
| Cow position: | chr7:34150391-34150240 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 13, 115 |
| Conread position: | 8-164 |
| Cow position: | chr7:66905807-66905656 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 12, 106 |
| Conread position: | 8-460 |
| Cow position: | chr7:57564013-57564440 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 298 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 204, 115 |
| Conread position: | 9-447 |
| Cow position: | chr7:33405157-33405581 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 114 |
| Conread position: | 9-456 |
| Cow position: | chr7:27583635-27584064 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 44 |
| Conread position: | 9-460 |
| Cow position: | chr7:7293580-7294018 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 270, 17 |
| Conread position: | 10-180 |
| Cow position: | chr7:68334028-68333863 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 161, 112 |
| Conread position: | 10-182 |
| Cow position: | chr7:21986511-21986343 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 10-392 |
| Cow position: | chr7:53358150-53358509 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 70 |
| Conread position: | 10-447 |
| Cow position: | chr7:10430338-10430759 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 10-447 |
| Cow position: | chr7:34487001-34486577 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 108 |
| Conread position: | 10-450 |
| Cow position: | chr7:27348592-27349006 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 291 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 320, 112 |
| Conread position: | 11-388 |
| Cow position: | chr7:64239919-64240280 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 107 |
| Conread position: | 11-412 |
| Cow position: | chr7:67429655-67429272 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 9, 119 |
| Conread position: | 11-447 |
| Cow position: | chr7:39792854-39792433 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 307 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 8, 112 |
| Conread position: | 12-447 |
| Cow position: | chr7:39554392-39554801 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 295 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 8, 65 |
| Conread position: | 20-466 |
| Cow position: | chr7:63949969-63950428 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 97 |
| Conread position: | 186-447 |
| Cow position: | chr7:67799758-67799494 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 209, 52 |
| Conread position: | 186-455 |
| Cow position: | chr7:32727582-32727863 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 190-434 |
| Cow position: | chr7:7258101-7257849 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-434 |
| Cow position: | chr7:60794372-60794626 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 190-447 |
| Cow position: | chr7:3300229-3300497 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr7:6580115-6579847 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr7:20514849-20515114 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr7:27101367-27101635 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr7:61809159-61808891 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-453 |
| Cow position: | chr7:11447486-11447210 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-476 |
| Cow position: | chr7:49604678-49604382 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 192-459 |
| Cow position: | chr7:545768-545496 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 87, 8 |
| Conread position: | 193-447 |
| Cow position: | chr7:59684110-59683848 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 9, 169 |
| Conread position: | 194-447 |
| Cow position: | chr7:15948-16214 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 195-454 |
| Cow position: | chr7:59679771-59679501 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 84, 149 |
| Conread position: | 197-447 |
| Cow position: | chr7:6647734-6647998 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 200-447 |
| Cow position: | chr7:20774414-20774664 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 215-447 |
| Cow position: | chr7:61560112-61559872 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 64, 83 |
| Conread position: | 215-453 |
| Cow position: | chr7:20798539-20798787 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 218-460 |
| Cow position: | chr7:58994494-58994240 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 233-451 |
| Cow position: | chr7:26852561-26852331 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 46, 0 |
Show alignments to all cow chromosomes.