Cow genome map
| Conread name: | unkn-MI-P-NA-aeq-c-03-1-UM.s1 |
| Conread position: | 1-170 |
| Cow position: | chr8:51039244-51039407 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 1-172 |
| Cow position: | chr8:41944991-41944827 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 1-175 |
| Cow position: | chr8:4687684-4687515 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 117 |
| Conread position: | 1-180 |
| Cow position: | chr8:21157509-21157685 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 160, 122 |
| Conread position: | 1-183 |
| Cow position: | chr8:25437596-25437423 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 76 |
| Conread position: | 1-185 |
| Cow position: | chr8:21584511-21584334 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 1-333 |
| Cow position: | chr8:19189940-19189609 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 82 |
| Conread position: | 1-447 |
| Cow position: | chr8:7162179-7161744 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 122 |
| Conread position: | 1-447 |
| Cow position: | chr8:50929848-50930283 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 1-459 |
| Cow position: | chr8:2170093-2170538 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 121 |
| Conread position: | 1-459 |
| Cow position: | chr8:38577118-38577566 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 49 |
| Conread position: | 1-459 |
| Cow position: | chr8:38585062-38585498 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 113 |
| Conread position: | 1-460 |
| Cow position: | chr8:45691740-45692183 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 113 |
| Conread position: | 3-184 |
| Cow position: | chr8:46051464-46051291 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 65 |
| Conread position: | 5-175 |
| Cow position: | chr8:12450296-12450131 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 119 |
| Conread position: | 5-447 |
| Cow position: | chr8:17312301-17311872 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 118 |
| Conread position: | 5-447 |
| Cow position: | chr8:50287644-50288075 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 122 |
| Conread position: | 6-180 |
| Cow position: | chr8:35213152-35212989 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 8-155 |
| Cow position: | chr8:25417583-25417724 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 8-176 |
| Cow position: | chr8:32647642-32647481 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 8-393 |
| Cow position: | chr8:12801401-12801033 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 48 |
| Conread position: | 8-459 |
| Cow position: | chr8:33589650-33589210 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 110 |
| Conread position: | 9-175 |
| Cow position: | chr8:10742396-10742557 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 12, 114 |
| Conread position: | 9-453 |
| Cow position: | chr8:59261645-59262077 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 115 |
| Conread position: | 10-175 |
| Cow position: | chr8:39194942-39195102 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 104 |
| Conread position: | 10-447 |
| Cow position: | chr8:5017452-5017026 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 10-447 |
| Cow position: | chr8:14927608-14928032 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 32 |
| Conread position: | 10-447 |
| Cow position: | chr8:24915063-24915489 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 104 |
| Conread position: | 10-447 |
| Cow position: | chr8:47661047-47661473 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 108 |
| Conread position: | 10-447 |
| Cow position: | chr8:60061656-60061229 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 104 |
| Conread position: | 11-447 |
| Cow position: | chr8:14590630-14591055 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 112 |
| Conread position: | 11-447 |
| Cow position: | chr8:42485188-42484765 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 11-459 |
| Cow position: | chr8:36635232-36635707 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 321 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 9, 113 |
| Conread position: | 17-447 |
| Cow position: | chr8:42419170-42419590 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 301 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 45, 110 |
| Conread position: | 31-453 |
| Cow position: | chr8:34109114-34108698 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 287 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 186-447 |
| Cow position: | chr8:25408850-25408577 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 190-432 |
| Cow position: | chr8:32041631-32041883 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-434 |
| Cow position: | chr8:1153204-1153447 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-434 |
| Cow position: | chr8:1320156-1319904 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-434 |
| Cow position: | chr8:34348788-34348536 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr8:10749479-10749217 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 48, 10 |
| Conread position: | 190-447 |
| Cow position: | chr8:22571195-22571463 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr8:27579509-27579243 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr8:32630913-32631181 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr8:37932205-37931937 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr8:47068698-47068960 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 193, 10 |
| Conread position: | 190-453 |
| Cow position: | chr8:8556034-8556307 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 193, 10 |
| Conread position: | 190-459 |
| Cow position: | chr8:32436968-32437250 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 84, 10 |
| Conread position: | 194-447 |
| Cow position: | chr8:8517474-8517737 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 200-447 |
| Cow position: | chr8:2886853-2886596 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 79, 88 |
| Conread position: | 200-447 |
| Cow position: | chr8:4687508-4687249 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 200-447 |
| Cow position: | chr8:11969177-11969433 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 200-447 |
| Cow position: | chr8:38606096-38606349 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 31, 84 |
| Conread position: | 200-447 |
| Cow position: | chr8:46943802-46944061 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 79, 127 |
| Conread position: | 200-447 |
| Cow position: | chr8:56883606-56883351 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 82, 95 |
| Conread position: | 200-453 |
| Cow position: | chr8:8308700-8308440 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 80, 161 |
| Conread position: | 200-453 |
| Cow position: | chr8:20136505-20136766 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 79, 125 |
| Conread position: | 200-454 |
| Cow position: | chr8:9964364-9964628 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 72, 129 |
| Conread position: | 203-447 |
| Cow position: | chr8:6684549-6684293 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 212-447 |
| Cow position: | chr8:25376854-25376607 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 247-447 |
| Cow position: | chr8:21157787-21157995 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 272-447 |
| Cow position: | chr8:15711383-15711570 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 272-447 |
| Cow position: | chr8:19591166-19590979 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 286-434 |
| Cow position: | chr8:47075286-47075130 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 310-460 |
| Cow position: | chr8:42569623-42569464 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 78, 31 |
Show alignments to all cow chromosomes.