Cow genome map
| Conread name: | unkn-MI-P-NA-aeq-c-03-1-UM.s1 |
| Conread position: | 1-175 |
| Cow position: | chr9:21410226-21410057 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 1-175 |
| Cow position: | chr9:37161881-37162049 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 1-185 |
| Cow position: | chr9:29329566-29329388 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 1-201 |
| Cow position: | chr9:3727530-3727336 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 165, 101 |
| Conread position: | 1-447 |
| Cow position: | chr9:30673299-30672865 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 122 |
| Conread position: | 1-460 |
| Cow position: | chr9:20308218-20308664 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 2-176 |
| Cow position: | chr9:7003731-7003565 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 18, 121 |
| Conread position: | 6-181 |
| Cow position: | chr9:29627825-29627996 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 117 |
| Conread position: | 7-172 |
| Cow position: | chr9:2482755-2482588 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 105 |
| Conread position: | 8-176 |
| Cow position: | chr9:9014020-9013857 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 12, 115 |
| Conread position: | 9-443 |
| Cow position: | chr9:3936509-3936933 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 83 |
| Conread position: | 10-432 |
| Cow position: | chr9:17305053-17305460 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 10-447 |
| Cow position: | chr9:16176693-16176270 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 10-448 |
| Cow position: | chr9:30488517-30488071 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 9, 86 |
| Conread position: | 11-176 |
| Cow position: | chr9:42310603-42310443 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 112 |
| Conread position: | 181-460 |
| Cow position: | chr9:2053531-2053241 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 150, 19 |
| Conread position: | 185-452 |
| Cow position: | chr9:5004746-5004468 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 190-447 |
| Cow position: | chr9:1075451-1075699 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr9:1251231-1251499 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 190-447 |
| Cow position: | chr9:4943045-4943314 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr9:28440574-28440306 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr9:36725266-36725000 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr9:45874100-45873844 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 195, 10 |
| Conread position: | 190-447 |
| Cow position: | chr9:50791478-50791210 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-447 |
| Cow position: | chr9:51211446-51211180 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 190-455 |
| Cow position: | chr9:30827443-30827170 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 192-447 |
| Cow position: | chr9:3998776-3998510 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 46, 8 |
| Conread position: | 198-443 |
| Cow position: | chr9:2210052-2209796 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 198-447 |
| Cow position: | chr9:3167699-3167445 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 40, 29 |
| Conread position: | 200-447 |
| Cow position: | chr9:7003562-7003307 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 190, 67 |
| Conread position: | 221-447 |
| Cow position: | chr9:3005511-3005746 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 278-459 |
| Cow position: | chr9:29329336-29329147 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 112, 0 |
Show alignments to all cow chromosomes.