Cow genome map

Conread name: unkn-MI-P-NA-aeq-c-03-1-UM.s1

Conread position: 1-103
Cow position: chrX:8574640-8574742 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 83
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-105
Cow position: chrX:10416620-10416724 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 89
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-175
Cow position: chrX:9093397-9093228 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 19, 122

Conread position: 1-447
Cow position: chrX:4752781-4753200 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 55

Conread position: 1-447
Cow position: chrX:13053846-13053416 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 313
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 20, 115

Conread position: 1-447
Cow position: chrX:13412293-13412728 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 122

Conread position: 1-447
Cow position: chrX:22816687-22816253 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 313
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 110, 116

Conread position: 1-453
Cow position: chrX:12668911-12669342 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 294
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 277, 122

Conread position: 1-453
Cow position: chrX:16015598-16016028 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 298
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 26, 127

Conread position: 1-459
Cow position: chrX:13416597-13417032 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 58

Conread position: 1-459
Cow position: chrX:29778671-29779102 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 306
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 278, 120

Conread position: 2-462
Cow position: chrX:321304-320859 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 323
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 17, 122

Conread position: 3-163
Cow position: chrX:22488982-22488827 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 17, 120

Conread position: 4-175
Cow position: chrX:16700137-16699972 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 107, 113

Conread position: 5-163
Cow position: chrX:38148425-38148272 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 15, 118

Conread position: 5-391
Cow position: chrX:23020163-23019800 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 267
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 107, 112

Conread position: 5-414
Cow position: chrX:5296715-5297108 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 286
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 217, 117

Conread position: 6-176
Cow position: chrX:1547807-1547642 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 14, 117

Conread position: 7-175
Cow position: chrX:27593158-27593320 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 115, 0

Conread position: 8-175
Cow position: chrX:29852733-29852895 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 12, 115

Conread position: 8-184
Cow position: chrX:41102635-41102805 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 105, 0

Conread position: 8-254
Cow position: chrX:2011866-2012091 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 182
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 116, 0

Conread position: 8-338
Cow position: chrX:13182295-13182595 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 241
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 242, 52

Conread position: 8-392
Cow position: chrX:41888150-41888511 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 55

Conread position: 8-447
Cow position: chrX:20720827-20720394 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 115

Conread position: 9-180
Cow position: chrX:26426738-26426901 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 71, 0

Conread position: 9-386
Cow position: chrX:12314926-12315279 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 260
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 269, 114

Conread position: 10-176
Cow position: chrX:26528805-26528644 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 10, 107

Conread position: 10-304
Cow position: chrX:23455187-23455460 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 199
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 10, 113

Conread position: 10-391
Cow position: chrX:23389687-23390046 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 265
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 10, 113

Conread position: 10-414
Cow position: chrX:23277856-23277478 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 278
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 11, 113

Conread position: 10-457
Cow position: chrX:4797154-4796713 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 119

Conread position: 10-460
Cow position: chrX:24134424-24134864 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 17

Conread position: 23-365
Cow position: chrX:18553245-18552923 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 233
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 323, 100

Conread position: 36-447
Cow position: chrX:971578-971179 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 77

Conread position: 147-435
Cow position: chrX:47397493-47397780 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 212
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 32, 145

Conread position: 179-447
Cow position: chrX:6249761-6250027 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 100, 112

Conread position: 179-447
Cow position: chrX:20797656-20797380 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 104

Conread position: 186-447
Cow position: chrX:21830208-21829935 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 196
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 94, 0

Conread position: 190-433
Cow position: chrX:28585651-28585401 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 100, 10

Conread position: 190-434
Cow position: chrX:983334-983082 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 89, 10

Conread position: 190-434
Cow position: chrX:5335814-5336066 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 89, 10

Conread position: 190-434
Cow position: chrX:6872401-6872653 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 89, 10

Conread position: 190-434
Cow position: chrX:7482304-7482052 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 89, 10

Conread position: 190-434
Cow position: chrX:7752578-7752319 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 185
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 89, 16

Conread position: 190-434
Cow position: chrX:11464331-11464582 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 184
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 89, 10

Conread position: 190-434
Cow position: chrX:13076026-13076277 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 89, 10

Conread position: 190-434
Cow position: chrX:13096600-13096851 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 89, 10

Conread position: 190-434
Cow position: chrX:31494090-31493838 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 180
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 89, 10

Conread position: 190-443
Cow position: chrX:15980285-15980548 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 186
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 89, 9

Conread position: 190-444
Cow position: chrX:8962904-8963166 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 181
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chrX:2604719-2604452 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 186
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chrX:5283105-5283373 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chrX:8480321-8480054 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 48, 10

Conread position: 190-447
Cow position: chrX:9009007-9008742 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 184
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chrX:9126031-9125767 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 190
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 78, 10

Conread position: 190-447
Cow position: chrX:10530891-10531154 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 181
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 197, 10

Conread position: 190-447
Cow position: chrX:11148664-11148929 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 18, 10

Conread position: 190-447
Cow position: chrX:11422543-11422278 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 17, 10

Conread position: 190-447
Cow position: chrX:12353912-12353644 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chrX:12654090-12654358 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 94, 10

Conread position: 190-447
Cow position: chrX:15178753-15179021 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 191
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 89, 21

Conread position: 190-447
Cow position: chrX:16362453-16362720 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 195
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chrX:17477753-17478021 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chrX:22611614-22611350 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 183
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chrX:26399508-26399777 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 188
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 86, 10

Conread position: 190-447
Cow position: chrX:26766537-26766793 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 184
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 212, 85

Conread position: 190-447
Cow position: chrX:27425653-27425916 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 185
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 89, 12

Conread position: 190-447
Cow position: chrX:29910753-29911021 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 185
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 48, 10

Conread position: 190-447
Cow position: chrX:32066493-32066758 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 191
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 89, 10

Conread position: 190-447
Cow position: chrX:37812834-37812566 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 188
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 89, 10

Conread position: 190-448
Cow position: chrX:5864066-5863797 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 185
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 89, 10

Conread position: 190-451
Cow position: chrX:5394338-5394597 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 181
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 89, 10

Conread position: 190-451
Cow position: chrX:28757823-28758091 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 193
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 89, 10

Conread position: 190-453
Cow position: chrX:12703032-12703306 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 197
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 89, 10

Conread position: 190-459
Cow position: chrX:31186552-31186832 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 189
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 92, 10

Conread position: 190-460
Cow position: chrX:1834490-1834209 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 195
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 89, 10

Conread position: 190-460
Cow position: chrX:14786216-14786495 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 194
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 93, 10

Conread position: 190-466
Cow position: chrX:29935267-29934991 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 197
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 89, 10

Conread position: 191-453
Cow position: chrX:35530533-35530260 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 191
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 88, 9

Conread position: 192-444
Cow position: chrX:22524934-22525197 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 190
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 87, 8

Conread position: 192-447
Cow position: chrX:22618629-22618895 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 182
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 88, 15

Conread position: 192-453
Cow position: chrX:21341066-21340798 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 186
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 195, 14

Conread position: 196-460
Cow position: chrX:20315394-20315671 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 191
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 8, 0

Conread position: 197-447
Cow position: chrX:27987160-27987418 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 176
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 11, 36

Conread position: 198-434
Cow position: chrX:16276313-16276069 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 175
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 81, 62

Conread position: 199-459
Cow position: chrX:32407551-32407278 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 200-447
Cow position: chrX:26528641-26528382 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 189
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 75, 0

Conread position: 200-460
Cow position: chrX:28650887-28651153 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 79, 57

Conread position: 201-434
Cow position: chrX:22129113-22129355 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 173
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 86, 0

Conread position: 204-447
Cow position: chrX:41850538-41850790 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 188
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 34, 60

Conread position: 222-447
Cow position: chrX:12343583-12343358 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 155
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 58, 155

Conread position: 222-447
Cow position: chrX:30057773-30057536 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 57, 0

Conread position: 243-447
Cow position: chrX:24090014-24089806 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 143
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 244-447
Cow position: chrX:16041571-16041784 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 35, 0

Conread position: 264-460
Cow position: chrX:26427049-26427254 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 15, 94

Conread position: 268-459
Cow position: chrX:2012081-2012275 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 102, 17

Conread position: 272-447
Cow position: chrX:506740-506927 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 7, 0

Conread position: 302-447
Cow position: chrX:12459395-12459238 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 305-447
Cow position: chrX:10416737-10416887 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 85, 28

Show alignments to all cow chromosomes.