• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
unkn-MI-P-NA-afp-h-05-1-UM.s1
        

               
Conread position:
               
1-186
               

               
Cow position:
               
chr1:51469781-51469596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
108, 57
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr1:81615881-81615703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 28
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr1:45578775-45578579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 107
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr1:68730238-68730037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 111
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr1:68400033-68400263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr1:49334158-49334414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 115
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr1:42537073-42537346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
57, 26
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr1:38706621-38706878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
38, 105
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr1:30862178-30862471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr1:98576305-98575969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
93, 70
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr1:81477631-81477972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
38, 111
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr1:20104498-20104146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
31, 111
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr1:101835043-101834673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
177, 22
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr1:76612901-76613285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
54, 110
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr1:86682336-86682716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
57, 90
               

               
Conread position:
               
1-391
               

               
Cow position:
               
chr1:97232202-97231799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
65, 134
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr1:53671503-53671967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 32
               

               
Conread position:
               
1-468
               

               
Cow position:
               
chr1:55705012-55705483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 111
               

               
Conread position:
               
1-469
               

               
Cow position:
               
chr1:64803866-64804338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 110
               

               
Conread position:
               
1-474
               

               
Cow position:
               
chr1:98551962-98551478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 22
               

               
Conread position:
               
1-479
               

               
Cow position:
               
chr1:92369978-92369476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 26
               

               
Conread position:
               
1-480
               

               
Cow position:
               
chr1:7443210-7442744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
57, 26
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr1:1980880-1981353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
1-482
               

               
Cow position:
               
chr1:71119753-71119268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 104
               

               
Conread position:
               
1-496
               

               
Cow position:
               
chr1:29935163-29935638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 22
               

               
Conread position:
               
1-511
               

               
Cow position:
               
chr1:73960918-73960428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 61
               

               
Conread position:
               
1-516
               

               
Cow position:
               
chr1:33720336-33719837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 121
               

               
Conread position:
               
1-516
               

               
Cow position:
               
chr1:73545681-73546192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
57, 22
               

               
Conread position:
               
1-518
               

               
Cow position:
               
chr1:94226318-94226827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 36
               

               
Conread position:
               
2-134
               

               
Cow position:
               
chr1:65883442-65883307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
2-147
               

               
Cow position:
               
chr1:67346387-67346243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
60, 108
               

               
Conread position:
               
2-214
               

               
Cow position:
               
chr1:24656487-24656268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 107
               

               
Conread position:
               
2-243
               

               
Cow position:
               
chr1:95835564-95835808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
24, 110
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr1:101177751-101177483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
53, 30
               

               
Conread position:
               
2-275
               

               
Cow position:
               
chr1:8671019-8670733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
16, 38
               

               
Conread position:
               
2-329
               

               
Cow position:
               
chr1:102305920-102306238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
2-332
               

               
Cow position:
               
chr1:38419261-38418935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 110
               

               
Conread position:
               
2-385
               

               
Cow position:
               
chr1:31272223-31272591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
176, 87
               

               
Conread position:
               
2-401
               

               
Cow position:
               
chr1:86110517-86110898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 17
               

               
Conread position:
               
2-474
               

               
Cow position:
               
chr1:53370315-53369831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
37, 108
               

               
Conread position:
               
2-508
               

               
Cow position:
               
chr1:52435501-52435001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
48, 20
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr1:709674-709858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
175, 103
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr1:70416531-70416718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chr1:46939643-46939844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
29, 103
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr1:69378368-69378574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
30, 107
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr1:1496299-1496539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
55, 25
               

               
Conread position:
               
3-269
               

               
Cow position:
               
chr1:73020429-73020698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 105
               

               
Conread position:
               
3-343
               

               
Cow position:
               
chr1:23998695-23999029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
60, 48
               

               
Conread position:
               
3-394
               

               
Cow position:
               
chr1:42175956-42175565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 35
               

               
Conread position:
               
3-408
               

               
Cow position:
               
chr1:70344275-70343868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 107
               

               
Conread position:
               
3-510
               

               
Cow position:
               
chr1:99642140-99642641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
3-518
               

               
Cow position:
               
chr1:69265056-69264543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 262
               

               
Conread position:
               
4-188
               

               
Cow position:
               
chr1:53540814-53540626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
50, 66
               

               
Conread position:
               
4-199
               

               
Cow position:
               
chr1:55110731-55110533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 104
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chr1:17317116-17317366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr1:53403009-53402751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
174, 104
               

               
Conread position:
               
4-331
               

               
Cow position:
               
chr1:45670873-45670542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
21, 62
               

               
Conread position:
               
4-373
               

               
Cow position:
               
chr1:29452150-29451780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
4-394
               

               
Cow position:
               
chr1:88913548-88913158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 112
               

               
Conread position:
               
4-508
               

               
Cow position:
               
chr1:196781-197272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
4-518
               

               
Cow position:
               
chr1:56225696-56225199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 106
               

               
Conread position:
               
4-518
               

               
Cow position:
               
chr1:63434575-63435082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 32
               

               
Conread position:
               
4-518
               

               
Cow position:
               
chr1:97755727-97755247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chr1:6986498-6986700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chr1:72069881-72070072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr1:48447698-48447469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
25, 105
               

               
Conread position:
               
5-240
               

               
Cow position:
               
chr1:92032372-92032614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 40
               

               
Conread position:
               
5-271
               

               
Cow position:
               
chr1:59020898-59020625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 182
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr1:48213918-48214193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
53, 115
               

               
Conread position:
               
5-390
               

               
Cow position:
               
chr1:22192995-22192608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
5-396
               

               
Cow position:
               
chr1:7748444-7748056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
34, 103
               

               
Conread position:
               
5-396
               

               
Cow position:
               
chr1:7752608-7752222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 105
               

               
Conread position:
               
5-431
               

               
Cow position:
               
chr1:28563335-28563761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 33
               

               
Conread position:
               
5-479
               

               
Cow position:
               
chr1:51446109-51445639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 86
               

               
Conread position:
               
5-501
               

               
Cow position:
               
chr1:65103852-65103373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 17
               

               
Conread position:
               
5-506
               

               
Cow position:
               
chr1:81912910-81913419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 75
               

               
Conread position:
               
6-198
               

               
Cow position:
               
chr1:92999279-92999073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
6-226
               

               
Cow position:
               
chr1:71945854-71946077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
52, 103
               

               
Conread position:
               
6-243
               

               
Cow position:
               
chr1:95153102-95152861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 103
               

               
Conread position:
               
6-257
               

               
Cow position:
               
chr1:93590368-93590608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
172, 13
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr1:46031189-46030858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
28, 115
               

               
Conread position:
               
6-373
               

               
Cow position:
               
chr1:92996664-92997037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
51, 16
               

               
Conread position:
               
6-468
               

               
Cow position:
               
chr1:81515461-81515010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
58, 21
               

               
Conread position:
               
6-493
               

               
Cow position:
               
chr1:1956114-1956583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
6-512
               

               
Cow position:
               
chr1:72068606-72069100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
52, 37
               

               
Conread position:
               
7-263
               

               
Cow position:
               
chr1:98912234-98911978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
25, 84
               

               
Conread position:
               
7-350
               

               
Cow position:
               
chr1:22824135-22823791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
19, 99
               

               
Conread position:
               
7-403
               

               
Cow position:
               
chr1:78097146-78096767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 30
               

               
Conread position:
               
7-407
               

               
Cow position:
               
chr1:55428726-55429128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
27, 106
               

               
Conread position:
               
7-486
               

               
Cow position:
               
chr1:78857102-78857569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 16
               

               
Conread position:
               
8-197
               

               
Cow position:
               
chr1:83641841-83642031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
8-198
               

               
Cow position:
               
chr1:3417599-3417397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
50, 24
               

               
Conread position:
               
8-302
               

               
Cow position:
               
chr1:92684460-92684757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
8-307
               

               
Cow position:
               
chr1:101159153-101158844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
16, 103
               

               
Conread position:
               
8-341
               

               
Cow position:
               
chr1:37886564-37886916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
8-343
               

               
Cow position:
               
chr1:10716725-10716394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
47, 15
               

               
Conread position:
               
8-359
               

               
Cow position:
               
chr1:84103832-84104178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
26, 104
               

               
Conread position:
               
9-163
               

               
Cow position:
               
chr1:98605481-98605642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
9-197
               

               
Cow position:
               
chr1:98684124-98683917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 199
               

               
Conread position:
               
9-198
               

               
Cow position:
               
chr1:79169932-79170111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
169, 19
               

               
Conread position:
               
9-198
               

               
Cow position:
               
chr1:98556893-98557077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
14, 109
               

               
Conread position:
               
9-331
               

               
Cow position:
               
chr1:77425336-77425006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 126
               

               
Conread position:
               
9-336
               

               
Cow position:
               
chr1:42541810-42541495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 11
               

               
Conread position:
               
9-382
               

               
Cow position:
               
chr1:91023244-91023615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 106
               

               
Conread position:
               
9-486
               

               
Cow position:
               
chr1:70538829-70538356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 95
               

               
Conread position:
               
9-491
               

               
Cow position:
               
chr1:45019584-45020055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 30
               

               
Conread position:
               
9-497
               

               
Cow position:
               
chr1:42887060-42887521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
9-515
               

               
Cow position:
               
chr1:81290729-81290241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 80
               

               
Conread position:
               
9-518
               

               
Cow position:
               
chr1:18936611-18937112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 84
               

               
Conread position:
               
10-198
               

               
Cow position:
               
chr1:731750-731931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
168, 22
               

               
Conread position:
               
10-198
               

               
Cow position:
               
chr1:63212036-63212217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
29, 91
               

               
Conread position:
               
10-213
               

               
Cow position:
               
chr1:76518647-76518446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
48, 101
               

               
Conread position:
               
10-266
               

               
Cow position:
               
chr1:102768400-102768146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
27, 101
               

               
Conread position:
               
10-472
               

               
Cow position:
               
chr1:10941874-10942325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
29, 101
               

               
Conread position:
               
10-472
               

               
Cow position:
               
chr1:10964512-10964061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
29, 101
               

               
Conread position:
               
10-491
               

               
Cow position:
               
chr1:61005335-61005818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 103
               

               
Conread position:
               
10-518
               

               
Cow position:
               
chr1:12222383-12222884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 18
               

               
Conread position:
               
11-186
               

               
Cow position:
               
chr1:69911334-69911157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 83
               

               
Conread position:
               
11-226
               

               
Cow position:
               
chr1:44269329-44269098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
11-250
               

               
Cow position:
               
chr1:45315410-45315653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
47, 101
               

               
Conread position:
               
11-302
               

               
Cow position:
               
chr1:186063-186342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
205, 12
               

               
Conread position:
               
11-317
               

               
Cow position:
               
chr1:50992180-50991852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
47, 272
               

               
Conread position:
               
11-324
               

               
Cow position:
               
chr1:73457876-73458183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
11-405
               

               
Cow position:
               
chr1:67304982-67305411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
16, 189
               

               
Conread position:
               
11-421
               

               
Cow position:
               
chr1:5596991-5597383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 89
               

               
Conread position:
               
11-448
               

               
Cow position:
               
chr1:85867825-85867384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
14, 104
               

               
Conread position:
               
11-518
               

               
Cow position:
               
chr1:11226010-11226524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
12-501
               

               
Cow position:
               
chr1:61885132-61884653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 106
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chr1:69678106-69678593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 15
               

               
Conread position:
               
12-518
               

               
Cow position:
               
chr1:24132839-24133334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 97
               

               
Conread position:
               
12-518
               

               
Cow position:
               
chr1:54206599-54207095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 99
               

               
Conread position:
               
13-317
               

               
Cow position:
               
chr1:78079943-78079638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
20, 99
               

               
Conread position:
               
13-448
               

               
Cow position:
               
chr1:26178589-26179024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
45, 98
               

               
Conread position:
               
13-501
               

               
Cow position:
               
chr1:68817585-68818058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
13-518
               

               
Cow position:
               
chr1:54258788-54258289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 98
               

               
Conread position:
               
13-518
               

               
Cow position:
               
chr1:81568810-81569315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 98
               

               
Conread position:
               
14-175
               

               
Cow position:
               
chr1:2935383-2935222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 97
               

               
Conread position:
               
14-198
               

               
Cow position:
               
chr1:78782207-78782017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
17, 133
               

               
Conread position:
               
14-252
               

               
Cow position:
               
chr1:36688162-36688397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
164, 48
               

               
Conread position:
               
14-277
               

               
Cow position:
               
chr1:62998015-62997756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
164, 36
               

               
Conread position:
               
14-304
               

               
Cow position:
               
chr1:48206321-48206603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
7, 95
               

               
Conread position:
               
14-327
               

               
Cow position:
               
chr1:49824847-49825162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
42, 100
               

               
Conread position:
               
14-344
               

               
Cow position:
               
chr1:31794790-31795112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
41, 22
               

               
Conread position:
               
14-362
               

               
Cow position:
               
chr1:66898275-66898625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
18, 98
               

               
Conread position:
               
14-410
               

               
Cow position:
               
chr1:90621288-90621686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 68
               

               
Conread position:
               
14-423
               

               
Cow position:
               
chr1:484244-484650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
12, 94
               

               
Conread position:
               
14-476
               

               
Cow position:
               
chr1:21508618-21508150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 75
               

               
Conread position:
               
15-263
               

               
Cow position:
               
chr1:14106391-14106648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
118, 93
               

               
Conread position:
               
15-332
               

               
Cow position:
               
chr1:30189374-30189049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
40, 97
               

               
Conread position:
               
15-401
               

               
Cow position:
               
chr1:95558257-95557870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 34
               

               
Conread position:
               
15-410
               

               
Cow position:
               
chr1:85688404-85688014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 97
               

               
Conread position:
               
15-424
               

               
Cow position:
               
chr1:61012524-61012124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
11, 40
               

               
Conread position:
               
15-515
               

               
Cow position:
               
chr1:84811724-84812215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 96
               

               
Conread position:
               
15-518
               

               
Cow position:
               
chr1:43352439-43352928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
39, 8
               

               
Conread position:
               
16-216
               

               
Cow position:
               
chr1:23180321-23180117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
42, 12
               

               
Conread position:
               
18-343
               

               
Cow position:
               
chr1:72356582-72356250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
41, 106
               

               
Conread position:
               
19-236
               

               
Cow position:
               
chr1:7966060-7965851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 74
               

               
Conread position:
               
19-422
               

               
Cow position:
               
chr1:61742243-61742647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
104, 39
               

               
Conread position:
               
23-134
               

               
Cow position:
               
chr1:95676039-95676149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
23-188
               

               
Cow position:
               
chr1:44814455-44814617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
23-214
               

               
Cow position:
               
chr1:92095592-92095395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 178
               

               
Conread position:
               
23-243
               

               
Cow position:
               
chr1:45478636-45478869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
23-262
               

               
Cow position:
               
chr1:64329141-64328891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 88
               

               
Conread position:
               
23-288
               

               
Cow position:
               
chr1:81481177-81481436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
23-342
               

               
Cow position:
               
chr1:77232360-77232674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
23-354
               

               
Cow position:
               
chr1:261255-261598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
23-354
               

               
Cow position:
               
chr1:9437079-9437428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
155, 14
               

               
Conread position:
               
23-401
               

               
Cow position:
               
chr1:87095002-87095397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
32, 88
               

               
Conread position:
               
23-461
               

               
Cow position:
               
chr1:34771290-34771726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 85
               

               
Conread position:
               
23-482
               

               
Cow position:
               
chr1:3923595-3924037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 72
               

               
Conread position:
               
23-486
               

               
Cow position:
               
chr1:92197663-92197213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 54
               

               
Conread position:
               
23-497
               

               
Cow position:
               
chr1:70829104-70828656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
177, 15
               

               
Conread position:
               
23-516
               

               
Cow position:
               
chr1:3324083-3323583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 88
               

               
Conread position:
               
23-518
               

               
Cow position:
               
chr1:29626701-29627194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
33, 95
               

               
Conread position:
               
23-518
               

               
Cow position:
               
chr1:91065948-91066427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 76
               

               
Conread position:
               
23-518
               

               
Cow position:
               
chr1:101822295-101822775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
31, 91
               

               
Conread position:
               
25-188
               

               
Cow position:
               
chr1:99031767-99031927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 68
               

               
Conread position:
               
25-407
               

               
Cow position:
               
chr1:89388550-89388163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 86
               

               
Conread position:
               
26-515
               

               
Cow position:
               
chr1:100422025-100421566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
27-501
               

               
Cow position:
               
chr1:27145439-27145914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
31, 85
               

               
Conread position:
               
27-511
               

               
Cow position:
               
chr1:62964473-62964007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
28-184
               

               
Cow position:
               
chr1:62968766-62968611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
28-198
               

               
Cow position:
               
chr1:70292007-70291829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
28-258
               

               
Cow position:
               
chr1:85712665-85712415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
28-263
               

               
Cow position:
               
chr1:78067846-78068099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 46
               

               
Conread position:
               
28-267
               

               
Cow position:
               
chr1:74832632-74832388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
30, 83
               

               
Conread position:
               
28-268
               

               
Cow position:
               
chr1:76657844-76658099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 241
               

               
Conread position:
               
28-281
               

               
Cow position:
               
chr1:816193-816456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
29, 247
               

               
Conread position:
               
28-282
               

               
Cow position:
               
chr1:102529649-102529902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 83
               

               
Conread position:
               
28-284
               

               
Cow position:
               
chr1:88360089-88359833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
34, 83
               

               
Conread position:
               
28-301
               

               
Cow position:
               
chr1:3966033-3965775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
150, 37
               

               
Conread position:
               
28-319
               

               
Cow position:
               
chr1:52912688-52912980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
28, 66
               

               
Conread position:
               
28-335
               

               
Cow position:
               
chr1:82513148-82513456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
27, 48
               

               
Conread position:
               
28-339
               

               
Cow position:
               
chr1:81580414-81580071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
7, 312
               

               
Conread position:
               
28-362
               

               
Cow position:
               
chr1:26934064-26934388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 12
               

               
Conread position:
               
28-367
               

               
Cow position:
               
chr1:64572718-64572381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 84
               

               
Conread position:
               
28-431
               

               
Cow position:
               
chr1:83072648-83072251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
28-436
               

               
Cow position:
               
chr1:24542366-24542779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
30, 83
               

               
Conread position:
               
28-470
               

               
Cow position:
               
chr1:59519115-59518670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
28-474
               

               
Cow position:
               
chr1:89341751-89342228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 377
               

               
Conread position:
               
28-482
               

               
Cow position:
               
chr1:56618452-56618920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
35, 83
               

               
Conread position:
               
28-485
               

               
Cow position:
               
chr1:71253330-71253801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 244
               

               
Conread position:
               
28-486
               

               
Cow position:
               
chr1:43505728-43505276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 76
               

               
Conread position:
               
28-486
               

               
Cow position:
               
chr1:79164878-79165339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
28-486
               

               
Cow position:
               
chr1:95101155-95100716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 92
               

               
Conread position:
               
28-492
               

               
Cow position:
               
chr1:50930776-50931222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 83
               

               
Conread position:
               
28-492
               

               
Cow position:
               
chr1:85162324-85162800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 12
               

               
Conread position:
               
28-493
               

               
Cow position:
               
chr1:37706765-37707223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 80
               

               
Conread position:
               
28-502
               

               
Cow position:
               
chr1:75745064-75744597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 80
               

               
Conread position:
               
28-509
               

               
Cow position:
               
chr1:61741760-61742238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
28-517
               

               
Cow position:
               
chr1:79844683-79844191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 87
               

               
Conread position:
               
28-518
               

               
Cow position:
               
chr1:25383873-25383383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 83
               

               
Conread position:
               
28-518
               

               
Cow position:
               
chr1:41056884-41056405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 19
               

               
Conread position:
               
28-518
               

               
Cow position:
               
chr1:41697258-41696782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
29-243
               

               
Cow position:
               
chr1:84010991-84010762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
30, 80
               

               
Conread position:
               
29-243
               

               
Cow position:
               
chr1:99221139-99221361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
29-317
               

               
Cow position:
               
chr1:100474442-100474149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
29, 82
               

               
Conread position:
               
29-460
               

               
Cow position:
               
chr1:12464462-12464885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 81
               

               
Conread position:
               
29-477
               

               
Cow position:
               
chr1:51770295-51769847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
149, 86
               

               
Conread position:
               
29-495
               

               
Cow position:
               
chr1:48443988-48444438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
30-486
               

               
Cow position:
               
chr1:10633242-10632806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
27, 61
               

               
Conread position:
               
30-516
               

               
Cow position:
               
chr1:52496970-52496499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
148, 24
               

               
Conread position:
               
31-143
               

               
Cow position:
               
chr1:97427515-97427402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 17
               

               
Conread position:
               
31-214
               

               
Cow position:
               
chr1:1605930-1606111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
27, 80
               

               
Conread position:
               
31-220
               

               
Cow position:
               
chr1:86383593-86383789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
31-247
               

               
Cow position:
               
chr1:759211-759432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
27, 79
               

               
Conread position:
               
31-254
               

               
Cow position:
               
chr1:2462572-2462362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
147, 27
               

               
Conread position:
               
31-256
               

               
Cow position:
               
chr1:41027273-41027052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
27, 78
               

               
Conread position:
               
31-261
               

               
Cow position:
               
chr1:73721565-73721332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
26, 80
               

               
Conread position:
               
31-263
               

               
Cow position:
               
chr1:30983291-30983525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
25, 80
               

               
Conread position:
               
31-302
               

               
Cow position:
               
chr1:95072543-95072264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
27, 7
               

               
Conread position:
               
31-341
               

               
Cow position:
               
chr1:68844955-68845263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
75, 23
               

               
Conread position:
               
31-360
               

               
Cow position:
               
chr1:58754597-58754920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
31-373
               

               
Cow position:
               
chr1:89449099-89448759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 54
               

               
Conread position:
               
31-384
               

               
Cow position:
               
chr1:24777783-24778134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 92
               

               
Conread position:
               
31-455
               

               
Cow position:
               
chr1:98461516-98461074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 235
               

               
Conread position:
               
31-461
               

               
Cow position:
               
chr1:43872108-43872553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 96
               

               
Conread position:
               
31-482
               

               
Cow position:
               
chr1:82337579-82338028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 60
               

               
Conread position:
               
31-486
               

               
Cow position:
               
chr1:53521106-53520659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
125, 27
               

               
Conread position:
               
31-511
               

               
Cow position:
               
chr1:45555566-45555089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 61
               

               
Conread position:
               
31-518
               

               
Cow position:
               
chr1:48105224-48105715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 81
               

               
Conread position:
               
32-198
               

               
Cow position:
               
chr1:45873847-45874028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
32-218
               

               
Cow position:
               
chr1:6398305-6398497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
24, 6
               

               
Conread position:
               
32-243
               

               
Cow position:
               
chr1:6381975-6381762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
25, 6
               

               
Conread position:
               
32-427
               

               
Cow position:
               
chr1:33206674-33207063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 76
               

               
Conread position:
               
37-358
               

               
Cow position:
               
chr1:69551284-69551607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 74
               

               
Conread position:
               
37-468
               

               
Cow position:
               
chr1:89381469-89381049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 74
               

               
Conread position:
               
37-501
               

               
Cow position:
               
chr1:100762269-100761829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 72
               

               
Conread position:
               
38-243
               

               
Cow position:
               
chr1:73719665-73719451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
18, 71
               

               
Conread position:
               
38-297
               

               
Cow position:
               
chr1:79004170-79003913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
20, 71
               

               
Conread position:
               
38-334
               

               
Cow position:
               
chr1:98512131-98511829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
70, 10
               

               
Conread position:
               
38-384
               

               
Cow position:
               
chr1:65318771-65318426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
24, 73
               

               
Conread position:
               
38-388
               

               
Cow position:
               
chr1:62519560-62519204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
20, 83
               

               
Conread position:
               
38-428
               

               
Cow position:
               
chr1:71228289-71227887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
24, 68
               

               
Conread position:
               
38-429
               

               
Cow position:
               
chr1:49082940-49082532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 72
               

               
Conread position:
               
38-432
               

               
Cow position:
               
chr1:86579163-86578755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 87
               

               
Conread position:
               
38-474
               

               
Cow position:
               
chr1:55357095-55357521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 73
               

               
Conread position:
               
39-212
               

               
Cow position:
               
chr1:362948-362776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
139, 46
               

               
Conread position:
               
39-252
               

               
Cow position:
               
chr1:31855036-31855266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
17, 91
               

               
Conread position:
               
39-369
               

               
Cow position:
               
chr1:5023543-5023890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
21, 243
               

               
Conread position:
               
39-470
               

               
Cow position:
               
chr1:31348246-31348672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
139, 16
               

               
Conread position:
               
39-482
               

               
Cow position:
               
chr1:6078093-6077651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 73
               

               
Conread position:
               
39-498
               

               
Cow position:
               
chr1:100741475-100741036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
17, 51
               

               
Conread position:
               
39-501
               

               
Cow position:
               
chr1:34856432-34856891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
19, 72
               

               
Conread position:
               
39-516
               

               
Cow position:
               
chr1:8811-8345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 82
               

               
Conread position:
               
39-518
               

               
Cow position:
               
chr1:11913688-11914151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 19
               

               
Conread position:
               
39-518
               

               
Cow position:
               
chr1:82884183-82884664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 141
               

               
Conread position:
               
40-479
               

               
Cow position:
               
chr1:71078770-71079193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 71
               

               
Conread position:
               
40-518
               

               
Cow position:
               
chr1:86113204-86113692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 71
               

               
Conread position:
               
41-273
               

               
Cow position:
               
chr1:33775448-33775684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
87, 21
               

               
Conread position:
               
41-389
               

               
Cow position:
               
chr1:17196434-17196783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 73
               

               
Conread position:
               
41-393
               

               
Cow position:
               
chr1:98413967-98413608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
137, 69
               

               
Conread position:
               
41-471
               

               
Cow position:
               
chr1:43388863-43389280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 49
               

               
Conread position:
               
41-495
               

               
Cow position:
               
chr1:48730617-48731084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 228
               

               
Conread position:
               
44-499
               

               
Cow position:
               
chr1:64302062-64302492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
52-456
               

               
Cow position:
               
chr1:49433084-49433482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 53
               

               
Conread position:
               
54-351
               

               
Cow position:
               
chr1:6826117-6826405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
124, 18
               

               
Conread position:
               
54-388
               

               
Cow position:
               
chr1:87197995-87197674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 46
               

               
Conread position:
               
54-486
               

               
Cow position:
               
chr1:68855341-68854928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 54
               

               
Conread position:
               
54-518
               

               
Cow position:
               
chr1:13637490-13637945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 54
               

               
Conread position:
               
54-518
               

               
Cow position:
               
chr1:53398148-53397705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 52
               

               
Conread position:
               
55-218
               

               
Cow position:
               
chr1:73494417-73494577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
123, 49
               

               
Conread position:
               
56-468
               

               
Cow position:
               
chr1:98360204-98360638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 149
               

               
Conread position:
               
56-508
               

               
Cow position:
               
chr1:57297681-57297224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
53, 337
               

               
Conread position:
               
59-454
               

               
Cow position:
               
chr1:84910471-84910849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 62
               

               
Conread position:
               
61-191
               

               
Cow position:
               
chr1:54645600-54645476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
117, 37
               

               
Conread position:
               
62-518
               

               
Cow position:
               
chr1:53458865-53458426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 17
               

               
Conread position:
               
64-397
               

               
Cow position:
               
chr1:45553068-45553393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 13
               

               
Conread position:
               
65-515
               

               
Cow position:
               
chr1:22827337-22826893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 80
               

               
Conread position:
               
74-518
               

               
Cow position:
               
chr1:76019542-76019959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
142, 16
               

               
Conread position:
               
80-233
               

               
Cow position:
               
chr1:69185559-69185722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
83-302
               

               
Cow position:
               
chr1:86912597-86912373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
52, 26
               

               
Conread position:
               
83-500
               

               
Cow position:
               
chr1:3789914-3790317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
84-214
               

               
Cow position:
               
chr1:3061398-3061532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
84-513
               

               
Cow position:
               
chr1:20384464-20384896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 191
               

               
Conread position:
               
88-301
               

               
Cow position:
               
chr1:92590345-92590131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 5
               

               
Conread position:
               
88-370
               

               
Cow position:
               
chr1:41047154-41047435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
90, 21
               

               
Conread position:
               
89-301
               

               
Cow position:
               
chr1:30136204-30136419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
90-370
               

               
Cow position:
               
chr1:18780175-18780469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
17, 245
               

               
Conread position:
               
90-507
               

               
Cow position:
               
chr1:67821069-67821479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 115
               

               
Conread position:
               
90-518
               

               
Cow position:
               
chr1:90868289-90868717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 62
               

               
Conread position:
               
91-516
               

               
Cow position:
               
chr1:68253744-68253314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
91-516
               

               
Cow position:
               
chr1:81613535-81613108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 28
               

               
Conread position:
               
93-262
               

               
Cow position:
               
chr1:82556265-82556437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
96-327
               

               
Cow position:
               
chr1:80841786-80841560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 14
               

               
Conread position:
               
96-509
               

               
Cow position:
               
chr1:64678840-64678427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 7
               

               
Conread position:
               
97-486
               

               
Cow position:
               
chr1:47233335-47233722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
99-410
               

               
Cow position:
               
chr1:91874775-91875082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
107-397
               

               
Cow position:
               
chr1:101632204-101632501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
71, 25
               

               
Conread position:
               
107-481
               

               
Cow position:
               
chr1:19481947-19482316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
108-341
               

               
Cow position:
               
chr1:7023256-7023014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 165
               

               
Conread position:
               
108-486
               

               
Cow position:
               
chr1:84255900-84255507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 12
               

               
Conread position:
               
108-492
               

               
Cow position:
               
chr1:5135580-5135944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
108-499
               

               
Cow position:
               
chr1:37321869-37322266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
108-499
               

               
Cow position:
               
chr1:95499366-95499755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 12
               

               
Conread position:
               
109-343
               

               
Cow position:
               
chr1:67688451-67688689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
109-392
               

               
Cow position:
               
chr1:97090459-97090167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
26, 168
               

               
Conread position:
               
110-379
               

               
Cow position:
               
chr1:101860356-101860631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 9
               

               
Conread position:
               
110-518
               

               
Cow position:
               
chr1:52039767-52039358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
111-368
               

               
Cow position:
               
chr1:78838926-78838665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
23, 140
               

               
Conread position:
               
114-510
               

               
Cow position:
               
chr1:97954337-97954719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
14, 149
               

               
Conread position:
               
114-518
               

               
Cow position:
               
chr1:40600172-40599773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 12
               

               
Conread position:
               
118-444
               

               
Cow position:
               
chr1:4414085-4414413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 10
               

               
Conread position:
               
119-454
               

               
Cow position:
               
chr1:74955900-74956239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 15
               

               
Conread position:
               
120-374
               

               
Cow position:
               
chr1:89230110-89230367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
58, 154
               

               
Conread position:
               
120-518
               

               
Cow position:
               
chr1:42873831-42874226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 9
               

               
Conread position:
               
121-337
               

               
Cow position:
               
chr1:19226935-19227157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 144
               

               
Conread position:
               
121-344
               

               
Cow position:
               
chr1:6752111-6752337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
121-487
               

               
Cow position:
               
chr1:70435119-70434743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 136
               

               
Conread position:
               
121-502
               

               
Cow position:
               
chr1:64250932-64251312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 23
               

               
Conread position:
               
121-518
               

               
Cow position:
               
chr1:85029075-85028682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 147
               

               
Conread position:
               
125-384
               

               
Cow position:
               
chr1:30047488-30047740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 7
               

               
Conread position:
               
127-335
               

               
Cow position:
               
chr1:51044196-51044406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
71, 5
               

               
Conread position:
               
127-401
               

               
Cow position:
               
chr1:12978795-12978514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 5
               

               
Conread position:
               
128-325
               

               
Cow position:
               
chr1:89158011-89158218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
128-460
               

               
Cow position:
               
chr1:93044131-93043804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 124
               

               
Conread position:
               
128-479
               

               
Cow position:
               
chr1:25281543-25281916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 294
               

               
Conread position:
               
128-485
               

               
Cow position:
               
chr1:83582819-83583186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 124
               

               
Conread position:
               
128-508
               

               
Cow position:
               
chr1:41252296-41252673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 127
               

               
Conread position:
               
128-518
               

               
Cow position:
               
chr1:82936483-82936861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 141
               

               
Conread position:
               
128-518
               

               
Cow position:
               
chr1:100800465-100800078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 6
               

               
Conread position:
               
129-298
               

               
Cow position:
               
chr1:80584542-80584369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 128
               

               
Conread position:
               
129-486
               

               
Cow position:
               
chr1:80900232-80899861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 44
               

               
Conread position:
               
130-501
               

               
Cow position:
               
chr1:3138027-3137670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
132-411
               

               
Cow position:
               
chr1:51417880-51417604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
51, 133
               

               
Conread position:
               
132-418
               

               
Cow position:
               
chr1:60281482-60281187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
46, 159
               

               
Conread position:
               
133-491
               

               
Cow position:
               
chr1:81355595-81355955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 132
               

               
Conread position:
               
134-301
               

               
Cow position:
               
chr1:35671646-35671477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 122
               

               
Conread position:
               
134-318
               

               
Cow position:
               
chr1:5155112-5155298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
44, 9
               

               
Conread position:
               
134-326
               

               
Cow position:
               
chr1:4581223-4581418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 123
               

               
Conread position:
               
134-331
               

               
Cow position:
               
chr1:99793654-99793450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 193
               

               
Conread position:
               
134-401
               

               
Cow position:
               
chr1:24581683-24581417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
44, 113
               

               
Conread position:
               
134-449
               

               
Cow position:
               
chr1:68863138-68862825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 65
               

               
Conread position:
               
134-482
               

               
Cow position:
               
chr1:100450069-100450433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
63, 118
               

               
Conread position:
               
134-491
               

               
Cow position:
               
chr1:70380036-70380398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 122
               

               
Conread position:
               
134-502
               

               
Cow position:
               
chr1:39509951-39510303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
44, 89
               

               
Conread position:
               
134-508
               

               
Cow position:
               
chr1:44125531-44125907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
44, 163
               

               
Conread position:
               
134-511
               

               
Cow position:
               
chr1:100706233-100705862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
44, 85
               

               
Conread position:
               
134-516
               

               
Cow position:
               
chr1:20205134-20204748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 139
               

               
Conread position:
               
134-518
               

               
Cow position:
               
chr1:37309412-37309787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
44, 123
               

               
Conread position:
               
134-518
               

               
Cow position:
               
chr1:77720142-77720506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
44, 7
               

               
Conread position:
               
134-518
               

               
Cow position:
               
chr1:88652743-88652352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 128
               

               
Conread position:
               
134-518
               

               
Cow position:
               
chr1:89350072-89349698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 139
               

               
Conread position:
               
134-518
               

               
Cow position:
               
chr1:101634818-101634422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 9
               

               
Conread position:
               
135-296
               

               
Cow position:
               
chr1:64113684-64113854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 123
               

               
Conread position:
               
135-447
               

               
Cow position:
               
chr1:100393057-100393373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
43, 119
               

               
Conread position:
               
135-502
               

               
Cow position:
               
chr1:55146902-55146540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 10
               

               
Conread position:
               
135-518
               

               
Cow position:
               
chr1:3456956-3456593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 75
               

               
Conread position:
               
135-518
               

               
Cow position:
               
chr1:7350654-7350259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 310
               

               
Conread position:
               
136-342
               

               
Cow position:
               
chr1:65028639-65028422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
42, 136
               

               
Conread position:
               
136-448
               

               
Cow position:
               
chr1:62291596-62291895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
42, 123
               

               
Conread position:
               
140-486
               

               
Cow position:
               
chr1:102349649-102350005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
38, 243
               

               
Conread position:
               
143-471
               

               
Cow position:
               
chr1:79278350-79278674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
148-508
               

               
Cow position:
               
chr1:6939543-6939908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
150-401
               

               
Cow position:
               
chr1:74927975-74927714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
28, 115
               

               
Conread position:
               
153-518
               

               
Cow position:
               
chr1:85361939-85361576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
25, 52
               

               
Conread position:
               
158-486
               

               
Cow position:
               
chr1:94404290-94403969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 98
               

               
Conread position:
               
160-313
               

               
Cow position:
               
chr1:61560642-61560803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
18, 106
               

               
Conread position:
               
160-434
               

               
Cow position:
               
chr1:89498034-89497770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
18, 82
               

               
Conread position:
               
164-378
               

               
Cow position:
               
chr1:87440544-87440325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
33, 140
               

               
Conread position:
               
170-514
               

               
Cow position:
               
chr1:63390696-63391047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 92
               

               
Conread position:
               
177-373
               

               
Cow position:
               
chr1:85301480-85301280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 54
               

               
Conread position:
               
180-431
               

               
Cow position:
               
chr1:82443395-82443649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
19, 92
               

               
Conread position:
               
181-518
               

               
Cow position:
               
chr1:44155309-44154983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
183-397
               

               
Cow position:
               
chr1:89508606-89508394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
187-430
               

               
Cow position:
               
chr1:24413502-24413248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
187-480
               

               
Cow position:
               
chr1:62920217-62919935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
29, 5
               

               
Conread position:
               
194-397
               

               
Cow position:
               
chr1:99039312-99039515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
15, 59
               

               
Conread position:
               
194-518
               

               
Cow position:
               
chr1:99136387-99136709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
210-515
               

               
Cow position:
               
chr1:1802164-1801867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
90, 55
               

               
Conread position:
               
214-486
               

               
Cow position:
               
chr1:50679262-50679533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
215-478
               

               
Cow position:
               
chr1:1403463-1403709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
87, 36
               

               
Conread position:
               
215-510
               

               
Cow position:
               
chr1:77099529-77099811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
241, 160
               

               
Conread position:
               
215-518
               

               
Cow position:
               
chr1:71946352-71946649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 137
               

               
Conread position:
               
217-502
               

               
Cow position:
               
chr1:12595885-12596164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 38
               

               
Conread position:
               
218-458
               

               
Cow position:
               
chr1:80631713-80631481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
228-491
               

               
Cow position:
               
chr1:41004355-41004619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 32
               

               
Conread position:
               
310-477
               

               
Cow position:
               
chr1:99221902-99222069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 70
               

               
Conread position:
               
317-518
               

               
Cow position:
               
chr1:92198689-92198494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
384-517
               

               
Cow position:
               
chr1:92976785-92976919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
7, 72
               
Show alignments to all cow chromosomes.