Cow genome map

Conread name: unkn-MI-P-NA-afp-h-05-1-UM.s1

Conread position: 1-190
Cow position: chr3:33460401-33460589 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 57, 26

Conread position: 1-198
Cow position: chr3:81616250-81616441 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 53, 18

Conread position: 1-214
Cow position: chr3:45314557-45314337 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 27, 109

Conread position: 1-362
Cow position: chr3:53508843-53508464 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 281
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 57, 278

Conread position: 1-362
Cow position: chr3:77582308-77581951 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 255
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 29, 116

Conread position: 1-431
Cow position: chr3:83215471-83215031 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 302
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 32, 111

Conread position: 1-434
Cow position: chr3:53240465-53240048 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 297
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 116, 30

Conread position: 1-460
Cow position: chr3:52651880-52652325 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 18

Conread position: 1-471
Cow position: chr3:75080953-75080504 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 67

Conread position: 1-485
Cow position: chr3:61224550-61225011 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 26

Conread position: 1-510
Cow position: chr3:72474119-72473606 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 22

Conread position: 1-513
Cow position: chr3:1830371-1830866 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 343
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 33, 107

Conread position: 1-518
Cow position: chr3:2675230-2674720 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 22

Conread position: 1-518
Cow position: chr3:7337584-7338091 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 110

Conread position: 2-196
Cow position: chr3:21959866-21959673 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 31, 38

Conread position: 2-198
Cow position: chr3:68624420-68624229 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 30, 92

Conread position: 2-257
Cow position: chr3:21642184-21641934 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 181
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 176, 21

Conread position: 2-277
Cow position: chr3:74801848-74802139 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 209
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 56, 20

Conread position: 2-279
Cow position: chr3:10591314-10591591 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 211
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 60, 36

Conread position: 2-313
Cow position: chr3:3656712-3656405 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 221
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 176, 21

Conread position: 2-317
Cow position: chr3:55094027-55094347 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 19, 73

Conread position: 2-362
Cow position: chr3:52487829-52487477 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 247
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 55, 108

Conread position: 2-368
Cow position: chr3:81087440-81087785 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 254
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 16, 39

Conread position: 2-486
Cow position: chr3:74234381-74233923 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 50

Conread position: 2-516
Cow position: chr3:55970715-55970200 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 109

Conread position: 3-198
Cow position: chr3:57641998-57641812 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 17

Conread position: 3-301
Cow position: chr3:49363303-49363020 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 214
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 56, 24

Conread position: 3-302
Cow position: chr3:22165220-22165513 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 228
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 55, 20

Conread position: 3-330
Cow position: chr3:59605040-59604725 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 20

Conread position: 3-343
Cow position: chr3:18426498-18426838 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 239
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 16, 111

Conread position: 3-467
Cow position: chr3:71238346-71237899 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 318
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 55, 25

Conread position: 3-491
Cow position: chr3:80565164-80564681 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 105

Conread position: 3-518
Cow position: chr3:2025402-2024875 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 108

Conread position: 4-191
Cow position: chr3:63333167-63332983 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 133
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 12, 24

Conread position: 4-391
Cow position: chr3:53318608-53318217 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 266
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 54, 106

Conread position: 4-401
Cow position: chr3:30941004-30940624 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 282
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 14, 50

Conread position: 4-482
Cow position: chr3:14801946-14801478 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 108

Conread position: 5-197
Cow position: chr3:20158274-20158081 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 18, 105

Conread position: 5-198
Cow position: chr3:68094344-68094156 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 149
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 135, 17

Conread position: 5-301
Cow position: chr3:47753434-47753129 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 115

Conread position: 5-310
Cow position: chr3:3316610-3316918 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 234
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 27, 98

Conread position: 5-343
Cow position: chr3:17331915-17331588 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 244
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 53, 23

Conread position: 5-343
Cow position: chr3:47417373-47417704 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 232
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 34, 103

Conread position: 5-518
Cow position: chr3:210521-210013 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 104

Conread position: 5-518
Cow position: chr3:18067324-18066825 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 29

Conread position: 5-518
Cow position: chr3:80072341-80071808 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 276

Conread position: 6-198
Cow position: chr3:73589571-73589759 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 52, 16

Conread position: 6-219
Cow position: chr3:83325403-83325204 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 172, 50

Conread position: 6-338
Cow position: chr3:76156181-76155854 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 239
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 52, 22

Conread position: 7-198
Cow position: chr3:18699911-18700099 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 100

Conread position: 7-202
Cow position: chr3:44594815-44594629 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 152
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 51, 20

Conread position: 7-221
Cow position: chr3:19641261-19641046 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 26, 105

Conread position: 7-231
Cow position: chr3:67962306-67962533 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 88, 20

Conread position: 7-481
Cow position: chr3:44932708-44932244 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 105

Conread position: 7-486
Cow position: chr3:49482516-49482981 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 105

Conread position: 8-214
Cow position: chr3:75966586-75966788 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 11, 105

Conread position: 8-288
Cow position: chr3:64197023-64196742 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 222
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 9, 107

Conread position: 8-395
Cow position: chr3:68156918-68156551 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 13

Conread position: 8-495
Cow position: chr3:27274720-27274254 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 15

Conread position: 8-497
Cow position: chr3:52419141-52418677 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 319
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 50, 103

Conread position: 9-198
Cow position: chr3:29413273-29413072 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 9-240
Cow position: chr3:9588429-9588680 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 86, 190

Conread position: 9-382
Cow position: chr3:62046864-62046485 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 102

Conread position: 9-476
Cow position: chr3:83454969-83455419 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 14

Conread position: 9-486
Cow position: chr3:65058892-65058425 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 103

Conread position: 9-501
Cow position: chr3:39969674-39970164 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 14

Conread position: 9-502
Cow position: chr3:65413087-65413568 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 31

Conread position: 10-201
Cow position: chr3:3262633-3262825 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 47, 12

Conread position: 10-256
Cow position: chr3:49344884-49344640 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 168, 98

Conread position: 10-328
Cow position: chr3:48468371-48468059 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 224
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 22, 100

Conread position: 10-331
Cow position: chr3:35621516-35621176 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 242
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 15, 137

Conread position: 10-386
Cow position: chr3:26982242-26981883 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 262
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 16, 45

Conread position: 10-421
Cow position: chr3:36375342-36375760 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 295
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 7, 92

Conread position: 10-501
Cow position: chr3:78945632-78946131 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 17

Conread position: 10-518
Cow position: chr3:18393210-18393693 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 17

Conread position: 10-518
Cow position: chr3:23168876-23169379 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 99

Conread position: 11-239
Cow position: chr3:53083792-53084024 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 174
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 47, 98

Conread position: 11-251
Cow position: chr3:59920233-59919984 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 186
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 11, 220

Conread position: 11-268
Cow position: chr3:33002575-33002326 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 179
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 47, 17

Conread position: 11-348
Cow position: chr3:1785033-1785385 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 256
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 47, 12

Conread position: 11-357
Cow position: chr3:55177560-55177905 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 263
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 53, 89

Conread position: 11-364
Cow position: chr3:19586055-19585702 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 256
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 47, 105

Conread position: 11-374
Cow position: chr3:60264531-60264884 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 265
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 24, 31

Conread position: 11-506
Cow position: chr3:53738979-53739488 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 84

Conread position: 12-219
Cow position: chr3:82656744-82656963 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 98

Conread position: 12-285
Cow position: chr3:47316189-47316459 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 194
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 27

Conread position: 12-315
Cow position: chr3:48459141-48459439 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 217
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 46, 10

Conread position: 12-502
Cow position: chr3:73467814-73467326 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 15

Conread position: 12-515
Cow position: chr3:45183632-45184152 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 344
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 52, 16

Conread position: 12-518
Cow position: chr3:48363260-48362774 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 98

Conread position: 12-518
Cow position: chr3:83474944-83474440 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 101

Conread position: 13-195
Cow position: chr3:2638120-2637941 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 45, 14

Conread position: 13-518
Cow position: chr3:35299877-35299365 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 169

Conread position: 14-214
Cow position: chr3:76415695-76415910 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 14-218
Cow position: chr3:75183508-75183299 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 14-243
Cow position: chr3:5040111-5040347 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 182
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 23, 110

Conread position: 14-253
Cow position: chr3:23131982-23132219 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 184
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 44, 13

Conread position: 14-315
Cow position: chr3:33330019-33329703 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 222
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 44, 9

Conread position: 14-317
Cow position: chr3:58317754-58318066 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 225
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 18, 77

Conread position: 14-324
Cow position: chr3:15950731-15951031 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 244
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 44, 13

Conread position: 14-362
Cow position: chr3:24468198-24468536 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 235
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 22, 13

Conread position: 14-384
Cow position: chr3:70761935-70762302 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 94

Conread position: 14-491
Cow position: chr3:59209014-59208532 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 220

Conread position: 14-493
Cow position: chr3:54781807-54782296 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 13

Conread position: 14-501
Cow position: chr3:15159218-15158749 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 22

Conread position: 15-214
Cow position: chr3:61023834-61024030 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 43, 23

Conread position: 15-485
Cow position: chr3:38691205-38691681 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 328
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 94, 43

Conread position: 16-240
Cow position: chr3:8813914-8814149 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 29, 12

Conread position: 19-404
Cow position: chr3:6182050-6182399 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 277
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 45, 19

Conread position: 19-485
Cow position: chr3:2506293-2506755 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 91

Conread position: 20-288
Cow position: chr3:10668699-10668961 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 210
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 38, 12

Conread position: 23-176
Cow position: chr3:58959967-58959813 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 94, 39

Conread position: 23-198
Cow position: chr3:39812238-39812059 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 144
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 123, 85

Conread position: 23-284
Cow position: chr3:53703768-53704044 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 192
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 33, 0

Conread position: 23-285
Cow position: chr3:22716098-22716380 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 209
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 41, 264

Conread position: 23-285
Cow position: chr3:76270067-76269818 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 203
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 33, 86

Conread position: 23-315
Cow position: chr3:10677434-10677743 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 222
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 35, 97

Conread position: 23-341
Cow position: chr3:48900151-48900474 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 230
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 35, 88

Conread position: 23-343
Cow position: chr3:17235024-17235347 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 228
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 16, 114

Conread position: 23-343
Cow position: chr3:71238653-71238335 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 232
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 29, 9

Conread position: 23-351
Cow position: chr3:3883641-3883965 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 238
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 35, 88

Conread position: 23-371
Cow position: chr3:48072707-48073040 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 257
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 155, 85

Conread position: 23-397
Cow position: chr3:57274238-57273874 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 275
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 16, 60

Conread position: 23-424
Cow position: chr3:11063541-11063163 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 36

Conread position: 23-466
Cow position: chr3:3556729-3556287 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 312
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 11, 100

Conread position: 23-479
Cow position: chr3:70900092-70899630 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 245

Conread position: 23-486
Cow position: chr3:77365113-77365571 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 30

Conread position: 23-516
Cow position: chr3:13353543-13353053 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 67

Conread position: 23-518
Cow position: chr3:45882078-45881600 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 89

Conread position: 23-518
Cow position: chr3:75480177-75479704 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 78

Conread position: 24-516
Cow position: chr3:6690172-6689687 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 16

Conread position: 25-425
Cow position: chr3:70609803-70609406 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 50

Conread position: 27-459
Cow position: chr3:15752446-15752878 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 62

Conread position: 28-146
Cow position: chr3:75151212-75151335 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 28-190
Cow position: chr3:621615-621454 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 30, 83

Conread position: 28-198
Cow position: chr3:26393125-26393288 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 30, 64

Conread position: 28-199
Cow position: chr3:55320417-55320598 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 28-212
Cow position: chr3:77002900-77002708 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 71, 82

Conread position: 28-220
Cow position: chr3:62186332-62186138 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 82

Conread position: 28-240
Cow position: chr3:23804676-23804479 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 158
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 142, 80

Conread position: 28-246
Cow position: chr3:5305977-5305755 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 176
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 94, 30

Conread position: 28-256
Cow position: chr3:9121016-9120792 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 179
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 150, 80

Conread position: 28-293
Cow position: chr3:19682880-19682605 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 194
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 30, 84

Conread position: 28-339
Cow position: chr3:15443551-15443864 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 217
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 12, 84

Conread position: 28-377
Cow position: chr3:23920252-23920602 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 241
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 30, 92

Conread position: 28-390
Cow position: chr3:67929997-67930367 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 9

Conread position: 28-478
Cow position: chr3:14632806-14633255 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 305
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 120, 15

Conread position: 28-486
Cow position: chr3:23408190-23408619 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 72

Conread position: 28-491
Cow position: chr3:15388394-15387929 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 91

Conread position: 28-499
Cow position: chr3:62788982-62789494 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 28-501
Cow position: chr3:21081206-21081677 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 80

Conread position: 28-515
Cow position: chr3:55189576-55190057 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 64

Conread position: 28-518
Cow position: chr3:16752080-16752556 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 84

Conread position: 28-518
Cow position: chr3:65969348-65968846 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 83

Conread position: 28-518
Cow position: chr3:71231572-71231097 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 82

Conread position: 29-283
Cow position: chr3:61466997-61467269 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 190
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 27, 239

Conread position: 29-312
Cow position: chr3:83988707-83988424 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 190
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 170, 81

Conread position: 29-343
Cow position: chr3:78093220-78093522 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 233
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 29, 50

Conread position: 29-389
Cow position: chr3:54506879-54506525 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 82

Conread position: 29-395
Cow position: chr3:59597346-59596995 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 262
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 29, 78

Conread position: 29-510
Cow position: chr3:10958071-10958529 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 79

Conread position: 30-195
Cow position: chr3:25702159-25702327 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 27, 81

Conread position: 30-517
Cow position: chr3:59610547-59611024 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 62

Conread position: 31-219
Cow position: chr3:13949368-13949571 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 27, 0

Conread position: 31-240
Cow position: chr3:59933551-59933334 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 27, 104

Conread position: 31-297
Cow position: chr3:2068084-2067802 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 27, 253

Conread position: 31-311
Cow position: chr3:31361594-31361312 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 27, 63

Conread position: 31-373
Cow position: chr3:54100542-54100891 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 245
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 24, 106

Conread position: 31-430
Cow position: chr3:16656316-16656702 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 276
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 25, 11

Conread position: 31-467
Cow position: chr3:8061291-8060874 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 34

Conread position: 31-474
Cow position: chr3:60597708-60597283 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 311
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 27, 73

Conread position: 31-482
Cow position: chr3:15051781-15052210 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 85

Conread position: 31-486
Cow position: chr3:75158526-75158088 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 59

Conread position: 31-499
Cow position: chr3:53150504-53150037 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 69

Conread position: 32-390
Cow position: chr3:7662027-7661667 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 77

Conread position: 32-486
Cow position: chr3:55124115-55124555 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 26

Conread position: 32-518
Cow position: chr3:22675938-22676392 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 6

Conread position: 33-486
Cow position: chr3:17221964-17222421 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 65

Conread position: 34-491
Cow position: chr3:66900559-66901024 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 76

Conread position: 35-288
Cow position: chr3:4481116-4480858 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 152
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 143, 58

Conread position: 37-311
Cow position: chr3:9117199-9116921 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 212
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 19, 79

Conread position: 37-501
Cow position: chr3:61169975-61169491 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 338
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 21, 92

Conread position: 38-354
Cow position: chr3:79196927-79196610 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 74

Conread position: 38-482
Cow position: chr3:11254001-11254422 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 302
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 19, 73

Conread position: 39-219
Cow position: chr3:13348976-13349161 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 39-242
Cow position: chr3:26603383-26603594 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 19, 73

Conread position: 39-285
Cow position: chr3:31349945-31350184 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 189
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 19, 66

Conread position: 39-341
Cow position: chr3:73820202-73820506 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 221
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 139, 76

Conread position: 39-400
Cow position: chr3:74079475-74079834 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 264
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 19, 72

Conread position: 39-461
Cow position: chr3:25755198-25754784 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 293
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 18, 92

Conread position: 39-465
Cow position: chr3:2680699-2680255 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 108

Conread position: 39-486
Cow position: chr3:53046495-53046934 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 70

Conread position: 39-501
Cow position: chr3:58540354-58540822 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 54

Conread position: 41-331
Cow position: chr3:21014795-21015087 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 202
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 137, 67

Conread position: 48-508
Cow position: chr3:64010659-64011116 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 58

Conread position: 53-344
Cow position: chr3:38783754-38783477 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 203
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 125, 45

Conread position: 54-486
Cow position: chr3:55010026-55010432 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 289
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 129, 46

Conread position: 55-302
Cow position: chr3:19626364-19626605 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 123, 11

Conread position: 56-513
Cow position: chr3:72391231-72390781 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 52

Conread position: 57-314
Cow position: chr3:32409361-32409103 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 190
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 120, 9

Conread position: 61-239
Cow position: chr3:15237552-15237727 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 155, 48

Conread position: 64-486
Cow position: chr3:68627552-68627952 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 298
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 131, 44

Conread position: 70-518
Cow position: chr3:28898090-28898537 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 315
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 108, 38

Conread position: 76-502
Cow position: chr3:45534150-45534592 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 404

Conread position: 84-328
Cow position: chr3:73299204-73298963 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 168
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 94, 48

Conread position: 87-480
Cow position: chr3:74611684-74611291 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 267
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 63, 16

Conread position: 89-516
Cow position: chr3:46901319-46900888 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 20

Conread position: 89-517
Cow position: chr3:81371773-81371348 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 186

Conread position: 90-259
Cow position: chr3:82629439-82629260 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 90-293
Cow position: chr3:15173203-15172991 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 34, 19

Conread position: 90-380
Cow position: chr3:26874713-26874415 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 127

Conread position: 90-434
Cow position: chr3:15506571-15506222 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 104

Conread position: 90-464
Cow position: chr3:48578924-48578586 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 259
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 19, 36

Conread position: 90-511
Cow position: chr3:70402016-70401601 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 36

Conread position: 90-518
Cow position: chr3:26921034-26920586 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 48

Conread position: 92-444
Cow position: chr3:17447499-17447843 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 17

Conread position: 92-479
Cow position: chr3:57624578-57624193 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 286
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 86, 17

Conread position: 92-499
Cow position: chr3:80581771-80581381 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 18

Conread position: 97-495
Cow position: chr3:50069878-50069494 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 12

Conread position: 100-473
Cow position: chr3:50614753-50614375 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 254
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 34, 183

Conread position: 102-486
Cow position: chr3:79093930-79094347 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 293
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 29, 91

Conread position: 102-492
Cow position: chr3:26681706-26682076 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 24

Conread position: 102-518
Cow position: chr3:53113285-53112859 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 156

Conread position: 103-467
Cow position: chr3:61144201-61143835 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 259
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 35, 6

Conread position: 105-289
Cow position: chr3:3478149-3478339 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 29, 15

Conread position: 107-485
Cow position: chr3:49328046-49327668 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 16

Conread position: 108-389
Cow position: chr3:60265151-60265426 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 211
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 28, 12

Conread position: 109-252
Cow position: chr3:50593812-50593961 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 109-390
Cow position: chr3:20677740-20678020 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 6

Conread position: 109-410
Cow position: chr3:14599038-14598745 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 217
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 61, 11

Conread position: 109-501
Cow position: chr3:17936738-17937131 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 25

Conread position: 110-501
Cow position: chr3:54739786-54740163 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 268
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 7, 23

Conread position: 110-508
Cow position: chr3:68881021-68881409 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 14

Conread position: 112-491
Cow position: chr3:26904209-26903833 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 112-501
Cow position: chr3:68707912-68708293 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 109

Conread position: 114-265
Cow position: chr3:29828051-29828210 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 55, 18

Conread position: 117-518
Cow position: chr3:26218958-26219370 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 24

Conread position: 118-370
Cow position: chr3:73915713-73915969 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 185
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 10, 119

Conread position: 118-508
Cow position: chr3:15057530-15057898 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 281
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 61, 10

Conread position: 119-370
Cow position: chr3:68616237-68616490 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 120-485
Cow position: chr3:73764107-73764469 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 71

Conread position: 120-518
Cow position: chr3:29887331-29887733 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 9

Conread position: 121-486
Cow position: chr3:56059900-56059530 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 11

Conread position: 121-515
Cow position: chr3:2630866-2630491 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 83

Conread position: 125-302
Cow position: chr3:18607757-18607566 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 127-334
Cow position: chr3:478716-478926 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 51, 168

Conread position: 127-499
Cow position: chr3:82019756-82020139 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 5

Conread position: 128-362
Cow position: chr3:74243076-74242838 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 177
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 128

Conread position: 128-384
Cow position: chr3:76922579-76922842 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 204
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 7, 111

Conread position: 128-390
Cow position: chr3:116274-116012 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 200
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 7, 127

Conread position: 128-466
Cow position: chr3:56476766-56476425 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 260

Conread position: 128-491
Cow position: chr3:73443012-73443369 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 44

Conread position: 128-508
Cow position: chr3:3738565-3738192 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 128

Conread position: 129-344
Cow position: chr3:63177565-63177338 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 49, 0

Conread position: 130-390
Cow position: chr3:22232573-22232837 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 138

Conread position: 131-424
Cow position: chr3:34556162-34556454 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 207
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 47, 21

Conread position: 134-298
Cow position: chr3:75608575-75608405 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 134-302
Cow position: chr3:3472117-3471942 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 44, 107

Conread position: 134-302
Cow position: chr3:81277391-81277567 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 44, 139

Conread position: 134-339
Cow position: chr3:51349900-51349682 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 44, 151

Conread position: 134-366
Cow position: chr3:55109536-55109778 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 180
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 44, 0

Conread position: 134-368
Cow position: chr3:24872781-24872552 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 40, 70

Conread position: 134-389
Cow position: chr3:58767340-58767084 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 186
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 44, 140

Conread position: 134-394
Cow position: chr3:4050270-4050006 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 184
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 44, 132

Conread position: 134-455
Cow position: chr3:55835744-55836075 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 128

Conread position: 134-473
Cow position: chr3:73461043-73460715 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 245
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 61, 138

Conread position: 134-486
Cow position: chr3:26066077-26065724 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 7

Conread position: 134-491
Cow position: chr3:74533425-74533066 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 7

Conread position: 134-498
Cow position: chr3:83815711-83816082 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 139

Conread position: 134-499
Cow position: chr3:9641645-9641274 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 124

Conread position: 134-518
Cow position: chr3:32585227-32584849 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 122

Conread position: 134-518
Cow position: chr3:55271968-55272349 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 138

Conread position: 134-518
Cow position: chr3:58968826-58969202 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 131

Conread position: 134-518
Cow position: chr3:61840352-61839982 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 266
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 49, 143

Conread position: 134-518
Cow position: chr3:79292905-79292526 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 122

Conread position: 135-329
Cow position: chr3:51402977-51402784 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 70

Conread position: 135-518
Cow position: chr3:59101903-59101526 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 263
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 43, 124

Conread position: 136-410
Cow position: chr3:3638253-3637981 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 197
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 38, 110

Conread position: 136-493
Cow position: chr3:67704621-67704256 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 255

Conread position: 137-390
Cow position: chr3:7940483-7940741 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 188
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 41, 98

Conread position: 140-455
Cow position: chr3:23444817-23445136 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 160

Conread position: 140-518
Cow position: chr3:2396718-2397092 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 65

Conread position: 140-518
Cow position: chr3:70896119-70895737 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 123

Conread position: 142-315
Cow position: chr3:70614418-70614595 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 36, 131

Conread position: 149-331
Cow position: chr3:12670553-12670741 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 150
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 51, 29

Conread position: 153-485
Cow position: chr3:79220916-79220573 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 241
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 25, 92

Conread position: 155-518
Cow position: chr3:49460870-49461246 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 159-518
Cow position: chr3:65800637-65800286 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 97

Conread position: 166-436
Cow position: chr3:56523401-56523658 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 201
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 12, 22

Conread position: 170-436
Cow position: chr3:56301317-56301575 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 19

Conread position: 178-499
Cow position: chr3:13512718-13513027 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 216
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 22, 83

Conread position: 180-486
Cow position: chr3:81277668-81277981 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 76

Conread position: 180-511
Cow position: chr3:48269887-48269561 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 183-401
Cow position: chr3:77665743-77665972 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 17, 173

Conread position: 194-518
Cow position: chr3:21340948-21341272 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 30

Conread position: 196-517
Cow position: chr3:77496833-77496509 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 13

Conread position: 215-486
Cow position: chr3:49731651-49731914 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 89, 42

Conread position: 215-486
Cow position: chr3:74409473-74409218 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 197
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 87, 43

Conread position: 215-491
Cow position: chr3:19789126-19789401 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 45

Conread position: 218-518
Cow position: chr3:45313035-45312743 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 205
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 80, 15

Conread position: 228-506
Cow position: chr3:41367005-41367280 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 198
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 36, 122

Conread position: 229-389
Cow position: chr3:34294308-34294469 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 73, 25

Conread position: 229-518
Cow position: chr3:7858347-7858043 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 216
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 6, 27

Conread position: 233-512
Cow position: chr3:61190954-61191218 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 197
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 24, 32

Conread position: 252-390
Cow position: chr3:22924453-22924593 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 261-501
Cow position: chr3:58130938-58130708 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 170
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 63, 0

Conread position: 264-491
Cow position: chr3:26894604-26894386 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 170
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 40, 137

Conread position: 268-515
Cow position: chr3:48566729-48566975 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 78, 46

Conread position: 270-518
Cow position: chr3:8717189-8716938 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 179
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 26, 16

Conread position: 289-516
Cow position: chr3:8556867-8557088 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 13, 110

Conread position: 296-518
Cow position: chr3:27286141-27285916 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 303-518
Cow position: chr3:23416967-23417174 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 185, 12

Show alignments to all cow chromosomes.