Cow genome map
| Conread name: | unkn-MI-P-NA-afq-h-05-1-UM.s1 |
| Conread position: | 12-519 |
| Cow position: | chr12:25312925-25313421 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 23 |
| Conread position: | 13-461 |
| Cow position: | chr12:19851875-19851444 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 13-464 |
| Cow position: | chr12:30593319-30593760 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 13-519 |
| Cow position: | chr12:10638469-10637983 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 336 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 39, 54 |
| Conread position: | 15-421 |
| Cow position: | chr12:22213887-22214296 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 17-519 |
| Cow position: | chr12:10790459-10790954 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 18-144 |
| Cow position: | chr12:27192890-27192764 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 18-432 |
| Cow position: | chr12:41289087-41288684 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 285 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 181, 19 |
| Conread position: | 18-435 |
| Cow position: | chr12:28707841-28708247 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 282 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-442 |
| Cow position: | chr12:39824667-39825073 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 18-452 |
| Cow position: | chr12:7651053-7651476 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 283 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-452 |
| Cow position: | chr12:18233369-18233791 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 18-455 |
| Cow position: | chr12:24020254-24019815 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 18-463 |
| Cow position: | chr12:12877132-12877565 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 18-464 |
| Cow position: | chr12:5166176-5165733 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 18-465 |
| Cow position: | chr12:15821507-15821068 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 297 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-465 |
| Cow position: | chr12:22286148-22286589 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 50 |
| Conread position: | 18-488 |
| Cow position: | chr12:5905309-5904853 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 18-489 |
| Cow position: | chr12:14568038-14568503 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-491 |
| Cow position: | chr12:22201894-22202362 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 18-519 |
| Cow position: | chr12:1055723-1056216 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr12:17719082-17718593 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr12:21433128-21432633 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr12:28012443-28012939 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr12:32146844-32147337 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-523 |
| Cow position: | chr12:24558364-24557866 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 331 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 108, 17 |
| Conread position: | 18-523 |
| Cow position: | chr12:25365249-25365732 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 338 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 36, 25 |
| Conread position: | 18-530 |
| Cow position: | chr12:22567097-22566600 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 331 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-531 |
| Cow position: | chr12:30142197-30141698 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 48 |
| Conread position: | 20-286 |
| Cow position: | chr12:5750950-5751210 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 35, 15 |
| Conread position: | 20-443 |
| Cow position: | chr12:17663737-17663317 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 289 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 101, 15 |
| Conread position: | 24-489 |
| Cow position: | chr12:10402616-10403068 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 39 |
| Conread position: | 25-537 |
| Cow position: | chr12:19713681-19714181 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 27-530 |
| Cow position: | chr12:6478665-6479153 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 42 |
| Conread position: | 30-485 |
| Cow position: | chr12:23490719-23491186 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 310 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 103, 36 |
| Conread position: | 30-519 |
| Cow position: | chr12:8840029-8839546 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 32-530 |
| Cow position: | chr12:8889322-8889809 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 34-324 |
| Cow position: | chr12:12837956-12838232 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 17, 31 |
| Conread position: | 34-465 |
| Cow position: | chr12:41337458-41337887 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 36-428 |
| Cow position: | chr12:541734-542122 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 268 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 41-322 |
| Cow position: | chr12:9886243-9886520 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 24 |
| Conread position: | 51-499 |
| Cow position: | chr12:13375974-13376402 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 290, 17 |
| Conread position: | 64-443 |
| Cow position: | chr12:8673709-8674083 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 101, 7 |
| Conread position: | 78-519 |
| Cow position: | chr12:7885151-7885590 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 288 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 95, 65 |
| Conread position: | 101-488 |
| Cow position: | chr12:35482698-35482321 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 233, 49 |
| Conread position: | 131-465 |
| Cow position: | chr12:15939201-15939533 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 32, 129 |
| Conread position: | 143-484 |
| Cow position: | chr12:1093565-1093231 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 187, 24 |
| Conread position: | 169-514 |
| Cow position: | chr12:23944803-23944461 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 92 |
| Conread position: | 196-520 |
| Cow position: | chr12:47487087-47487404 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 153, 17 |
| Conread position: | 202-525 |
| Cow position: | chr12:14852655-14852972 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 129, 43 |
| Conread position: | 212-524 |
| Cow position: | chr12:17969911-17969607 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 227, 50 |
| Conread position: | 226-464 |
| Cow position: | chr12:40356927-40357165 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 105, 31 |
| Conread position: | 226-530 |
| Cow position: | chr12:28840391-28840089 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 105, 31 |
| Conread position: | 259-519 |
| Cow position: | chr12:34789389-34789647 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 13 |
| Conread position: | 261-529 |
| Cow position: | chr12:4011292-4011022 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 79, 122 |
Show alignments to all cow chromosomes.