Cow genome map
| Conread name: | unkn-MI-P-NA-afq-h-05-1-UM.s1 |
| Conread position: | 5-465 |
| Cow position: | chr13:7366045-7365591 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 13-237 |
| Cow position: | chr13:41701768-41701996 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 13-458 |
| Cow position: | chr13:34762452-34762869 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 13-498 |
| Cow position: | chr13:6054786-6055260 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 13-524 |
| Cow position: | chr13:1839819-1840331 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 22 |
| Conread position: | 13-529 |
| Cow position: | chr13:11687871-11687362 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 53 |
| Conread position: | 15-495 |
| Cow position: | chr13:20977301-20977785 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 50 |
| Conread position: | 16-519 |
| Cow position: | chr13:60646007-60646502 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 18-236 |
| Cow position: | chr13:15872860-15873084 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 18-252 |
| Cow position: | chr13:33631572-33631801 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 18-294 |
| Cow position: | chr13:57423772-57424036 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 18-302 |
| Cow position: | chr13:46182186-46182462 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-321 |
| Cow position: | chr13:60508710-60508421 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 18-322 |
| Cow position: | chr13:16270384-16270683 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-322 |
| Cow position: | chr13:34375668-34375970 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 18-435 |
| Cow position: | chr13:32009408-32009016 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 18-443 |
| Cow position: | chr13:21657054-21657466 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 18-449 |
| Cow position: | chr13:6138561-6138976 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 18-454 |
| Cow position: | chr13:47590728-47590303 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 292 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 313, 50 |
| Conread position: | 18-465 |
| Cow position: | chr13:6616335-6615888 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 300 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-465 |
| Cow position: | chr13:26073348-26073777 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 18 |
| Conread position: | 18-465 |
| Cow position: | chr13:34905016-34905443 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 302 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 18-465 |
| Cow position: | chr13:41807165-41807603 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 292 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 18-481 |
| Cow position: | chr13:60219666-60219217 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 306 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 18-501 |
| Cow position: | chr13:3480165-3480644 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-501 |
| Cow position: | chr13:48611569-48611101 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 18-514 |
| Cow position: | chr13:11571099-11571588 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 76 |
| Conread position: | 18-514 |
| Cow position: | chr13:16243654-16244142 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 331 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 18-530 |
| Cow position: | chr13:5717116-5717616 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 18-530 |
| Cow position: | chr13:23266256-23266755 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-530 |
| Cow position: | chr13:36075684-36076186 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-530 |
| Cow position: | chr13:54864515-54864021 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 339 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 19-144 |
| Cow position: | chr13:7297364-7297489 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 31, 42 |
| Conread position: | 19-519 |
| Cow position: | chr13:51297911-51298404 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 20-274 |
| Cow position: | chr13:5317198-5317446 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 22-517 |
| Cow position: | chr13:6869877-6869394 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 24-519 |
| Cow position: | chr13:11669384-11669872 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 335 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 33, 11 |
| Conread position: | 25-191 |
| Cow position: | chr13:14724606-14724438 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 25-519 |
| Cow position: | chr13:9417040-9416542 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 336 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 25-524 |
| Cow position: | chr13:51481267-51481762 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 28-530 |
| Cow position: | chr13:24702812-24703325 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 29-460 |
| Cow position: | chr13:34385565-34385997 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 37 |
| Conread position: | 29-465 |
| Cow position: | chr13:43974390-43974815 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 30-182 |
| Cow position: | chr13:50417492-50417646 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 31-518 |
| Cow position: | chr13:21905346-21905827 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 31-530 |
| Cow position: | chr13:21764904-21764411 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 329 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 32-451 |
| Cow position: | chr13:49355506-49355092 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 42 |
| Conread position: | 32-547 |
| Cow position: | chr13:43034451-43033948 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 124 |
| Conread position: | 33-491 |
| Cow position: | chr13:48378166-48377721 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 17, 80 |
| Conread position: | 33-523 |
| Cow position: | chr13:26172784-26173269 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 34-465 |
| Cow position: | chr13:3143654-3144070 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 34-514 |
| Cow position: | chr13:42896477-42896008 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 37-465 |
| Cow position: | chr13:18329565-18329988 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 38-276 |
| Cow position: | chr13:11173535-11173767 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 39-517 |
| Cow position: | chr13:18438149-18437682 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 40-490 |
| Cow position: | chr13:49062875-49062432 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 297 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 10, 29 |
| Conread position: | 60-507 |
| Cow position: | chr13:3775609-3775173 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 288 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 239, 198 |
| Conread position: | 68-435 |
| Cow position: | chr13:34508303-34508660 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 307, 82 |
| Conread position: | 70-451 |
| Cow position: | chr13:46597632-46597990 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 369, 83 |
| Conread position: | 72-561 |
| Cow position: | chr13:34123190-34123653 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 314 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 78-464 |
| Cow position: | chr13:5997354-5996975 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 31 |
| Conread position: | 112-535 |
| Cow position: | chr13:45658075-45657674 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 73, 12 |
| Conread position: | 164-451 |
| Cow position: | chr13:38074756-38075048 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 55 |
| Conread position: | 169-519 |
| Cow position: | chr13:53182099-53182449 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 161, 99 |
| Conread position: | 171-443 |
| Cow position: | chr13:59476141-59475875 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 176-532 |
| Cow position: | chr13:46463039-46462696 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 154, 69 |
| Conread position: | 181-375 |
| Cow position: | chr13:59686055-59685861 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 121, 76 |
| Conread position: | 187-476 |
| Cow position: | chr13:46997365-46997659 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 12, 73 |
| Conread position: | 188-453 |
| Cow position: | chr13:11223546-11223815 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 199 |
| Conread position: | 226-540 |
| Cow position: | chr13:47570445-47570139 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 215, 31 |
| Conread position: | 278-527 |
| Cow position: | chr13:57767978-57767739 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 48, 104 |
Show alignments to all cow chromosomes.