Cow genome map
| Conread name: | unkn-MI-P-NA-afq-h-05-1-UM.s1 |
| Conread position: | 13-212 |
| Cow position: | chr15:15215812-15216007 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 13-250 |
| Cow position: | chr15:52463364-52463597 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 13-464 |
| Cow position: | chr15:49191109-49191552 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 18-164 |
| Cow position: | chr15:17674167-17674022 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 18-263 |
| Cow position: | chr15:30230535-30230781 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 18-266 |
| Cow position: | chr15:39312937-39313179 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-302 |
| Cow position: | chr15:27128129-27128410 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-325 |
| Cow position: | chr15:50947595-50947882 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 18-455 |
| Cow position: | chr15:24968304-24968743 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 297 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-465 |
| Cow position: | chr15:7941868-7941429 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 19 |
| Conread position: | 18-465 |
| Cow position: | chr15:16968131-16967693 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 18-465 |
| Cow position: | chr15:22751976-22752420 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 18-465 |
| Cow position: | chr15:25203520-25203961 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-465 |
| Cow position: | chr15:35838554-35838114 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 18-518 |
| Cow position: | chr15:67114-67607 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 49 |
| Conread position: | 18-518 |
| Cow position: | chr15:23561479-23560991 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 18-519 |
| Cow position: | chr15:8629756-8629266 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr15:20347820-20348310 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr15:44260219-44260708 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 18-526 |
| Cow position: | chr15:22095624-22096116 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 19-443 |
| Cow position: | chr15:38285756-38285336 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 19-541 |
| Cow position: | chr15:10802098-10801576 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 20-215 |
| Cow position: | chr15:22972534-22972725 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 20-494 |
| Cow position: | chr15:40343807-40344269 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 20-519 |
| Cow position: | chr15:36423165-36423658 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 45 |
| Conread position: | 20-526 |
| Cow position: | chr15:9619950-9620450 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 22-527 |
| Cow position: | chr15:4625986-4626470 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 324 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 22-529 |
| Cow position: | chr15:30725813-30726291 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 339 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 308, 25 |
| Conread position: | 23-465 |
| Cow position: | chr15:264052-263628 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 24-513 |
| Cow position: | chr15:29863876-29864354 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 25-375 |
| Cow position: | chr15:44377839-44378191 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 25-432 |
| Cow position: | chr15:6290672-6290271 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 25-447 |
| Cow position: | chr15:21839622-21840022 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 25-519 |
| Cow position: | chr15:49307238-49306753 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 26-535 |
| Cow position: | chr15:19859094-19859586 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 55 |
| Conread position: | 27-437 |
| Cow position: | chr15:29449048-29449450 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 15 |
| Conread position: | 29-530 |
| Cow position: | chr15:33399859-33399355 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 40 |
| Conread position: | 30-285 |
| Cow position: | chr15:28172070-28171813 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 21, 28 |
| Conread position: | 30-326 |
| Cow position: | chr15:36355299-36355591 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 30-375 |
| Cow position: | chr15:7670039-7670379 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 248 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 30-465 |
| Cow position: | chr15:6647976-6648405 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 30-523 |
| Cow position: | chr15:20154755-20155225 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 329 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 87, 17 |
| Conread position: | 31-250 |
| Cow position: | chr15:13615765-13615981 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 31-519 |
| Cow position: | chr15:16787204-16787687 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 32-455 |
| Cow position: | chr15:46055124-46054716 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 291 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 32-465 |
| Cow position: | chr15:2928682-2928270 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 24, 35 |
| Conread position: | 32-513 |
| Cow position: | chr15:24639460-24638997 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 315 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 32-524 |
| Cow position: | chr15:45501716-45502201 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 35 |
| Conread position: | 32-529 |
| Cow position: | chr15:14719473-14718986 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 329 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 33-495 |
| Cow position: | chr15:50958890-50958437 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 307 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 34-252 |
| Cow position: | chr15:39090792-39090997 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 34-465 |
| Cow position: | chr15:12417278-12417704 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 36-526 |
| Cow position: | chr15:13683761-13683290 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 322 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 37-463 |
| Cow position: | chr15:7319988-7319578 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 286 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 37-526 |
| Cow position: | chr15:28071004-28071485 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 37-537 |
| Cow position: | chr15:18661918-18661428 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 322 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 38-471 |
| Cow position: | chr15:29813503-29813086 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 90, 30 |
| Conread position: | 39-463 |
| Cow position: | chr15:31086084-31086489 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 199, 27 |
| Conread position: | 45-458 |
| Cow position: | chr15:34499724-34499334 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 5, 22 |
| Conread position: | 45-514 |
| Cow position: | chr15:40170953-40171410 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 54-482 |
| Cow position: | chr15:42116759-42117177 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 12 |
| Conread position: | 61-465 |
| Cow position: | chr15:6806125-6805724 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 111, 79 |
| Conread position: | 79-465 |
| Cow position: | chr15:26388578-26388957 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 93, 59 |
| Conread position: | 79-488 |
| Cow position: | chr15:19256337-19256751 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 70, 105 |
| Conread position: | 109-537 |
| Cow position: | chr15:32877364-32876959 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 277 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 221, 12 |
| Conread position: | 111-536 |
| Cow position: | chr15:38750614-38750204 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 273 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 130, 33 |
| Conread position: | 124-530 |
| Cow position: | chr15:21156793-21156403 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 171, 19 |
| Conread position: | 135-519 |
| Cow position: | chr15:3792141-3791760 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 86, 19 |
| Conread position: | 146-443 |
| Cow position: | chr15:43079169-43079462 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 147-443 |
| Cow position: | chr15:23057239-23057527 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 183, 6 |
| Conread position: | 157-514 |
| Cow position: | chr15:35739545-35739194 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 162, 13 |
| Conread position: | 166-519 |
| Cow position: | chr15:2925510-2925163 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 330, 7 |
| Conread position: | 172-548 |
| Cow position: | chr15:9122377-9122015 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 258 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 273, 68 |
| Conread position: | 182-535 |
| Cow position: | chr15:6447507-6447841 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 166, 46 |
| Conread position: | 194-489 |
| Cow position: | chr15:16784600-16784307 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 140, 68 |
| Conread position: | 197-494 |
| Cow position: | chr15:13855871-13855588 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 133, 30 |
| Conread position: | 201-442 |
| Cow position: | chr15:15030125-15029895 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 201-530 |
| Cow position: | chr15:7447451-7447772 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 86, 15 |
| Conread position: | 202-529 |
| Cow position: | chr15:28151221-28151531 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 316, 14 |
| Conread position: | 245-530 |
| Cow position: | chr15:46231726-46231437 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 194, 134 |
| Conread position: | 258-529 |
| Cow position: | chr15:40821343-40821074 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 73, 79 |
| Conread position: | 286-530 |
| Cow position: | chr15:24607230-24607477 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 6, 69 |
Show alignments to all cow chromosomes.