Cow genome map
| Conread name: | unkn-MI-P-NA-afq-h-05-1-UM.s1 |
| Conread position: | 2-215 |
| Cow position: | chr16:50872625-50872833 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 48, 33 |
| Conread position: | 13-210 |
| Cow position: | chr16:54226212-54226406 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 13-234 |
| Cow position: | chr16:43743343-43743560 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 13-461 |
| Cow position: | chr16:45551444-45551016 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 15-526 |
| Cow position: | chr16:24875868-24876351 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 342 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 36, 50 |
| Conread position: | 17-540 |
| Cow position: | chr16:11220252-11219745 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 339 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 11, 53 |
| Conread position: | 18-148 |
| Cow position: | chr16:48370377-48370506 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-154 |
| Cow position: | chr16:48676823-48676958 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 47 |
| Conread position: | 18-162 |
| Cow position: | chr16:51617196-51617339 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-236 |
| Cow position: | chr16:23990918-23991127 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 18-302 |
| Cow position: | chr16:33711943-33711669 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 18-316 |
| Cow position: | chr16:55270335-55270059 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 18-354 |
| Cow position: | chr16:5631884-5632212 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-374 |
| Cow position: | chr16:46552379-46552038 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 34, 12 |
| Conread position: | 18-437 |
| Cow position: | chr16:56149882-56149475 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 283 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-443 |
| Cow position: | chr16:49126611-49127022 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-453 |
| Cow position: | chr16:44667761-44668173 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 297 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 18-455 |
| Cow position: | chr16:47626625-47627047 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 297 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 231, 17 |
| Conread position: | 18-465 |
| Cow position: | chr16:50190016-50190451 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 18-512 |
| Cow position: | chr16:11007829-11007321 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 328 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 18-519 |
| Cow position: | chr16:15312392-15311891 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-519 |
| Cow position: | chr16:28468019-28468513 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-524 |
| Cow position: | chr16:53214649-53214155 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 49 |
| Conread position: | 18-526 |
| Cow position: | chr16:51087885-51087386 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 18-533 |
| Cow position: | chr16:21453541-21454038 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 339 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 32, 11 |
| Conread position: | 18-537 |
| Cow position: | chr16:42733186-42733692 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 19-230 |
| Cow position: | chr16:38290530-38290737 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 19-443 |
| Cow position: | chr16:27538117-27537700 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 19-465 |
| Cow position: | chr16:29512865-29512434 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 295 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 311, 47 |
| Conread position: | 19-519 |
| Cow position: | chr16:12485197-12485690 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 19-526 |
| Cow position: | chr16:50712336-50712836 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 25-530 |
| Cow position: | chr16:29322907-29323377 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 26-530 |
| Cow position: | chr16:19067582-19067091 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 40 |
| Conread position: | 30-166 |
| Cow position: | chr16:12526947-12527085 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 23, 35 |
| Conread position: | 30-327 |
| Cow position: | chr16:44188731-44189026 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 30-375 |
| Cow position: | chr16:14089208-14089538 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 37 |
| Conread position: | 30-492 |
| Cow position: | chr16:43890385-43890831 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 30-526 |
| Cow position: | chr16:11055058-11054594 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 19 |
| Conread position: | 30-530 |
| Cow position: | chr16:27013483-27012996 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 31-519 |
| Cow position: | chr16:39616307-39615832 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 316 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 32-230 |
| Cow position: | chr16:53662441-53662649 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 32-443 |
| Cow position: | chr16:52761370-52760982 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 274 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 32-518 |
| Cow position: | chr16:38518113-38518583 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 310 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 32-524 |
| Cow position: | chr16:24147731-24147257 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 327 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 32-524 |
| Cow position: | chr16:29864234-29864726 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 25 |
| Conread position: | 33-235 |
| Cow position: | chr16:8801051-8801250 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 33-478 |
| Cow position: | chr16:50036442-50036006 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 38 |
| Conread position: | 34-455 |
| Cow position: | chr16:19622599-19623026 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 31 |
| Conread position: | 41-548 |
| Cow position: | chr16:19327683-19327195 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 42-465 |
| Cow position: | chr16:49141989-49142410 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 287 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 73-437 |
| Cow position: | chr16:17665171-17664803 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 93, 65 |
| Conread position: | 76-458 |
| Cow position: | chr16:37528532-37528167 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 255, 79 |
| Conread position: | 77-518 |
| Cow position: | chr16:32839596-32839175 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 300, 88 |
| Conread position: | 88-465 |
| Cow position: | chr16:15495484-15495117 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 226, 40 |
| Conread position: | 91-437 |
| Cow position: | chr16:49578000-49577666 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 237, 30 |
| Conread position: | 101-426 |
| Cow position: | chr16:1223640-1223959 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 247, 55 |
| Conread position: | 104-530 |
| Cow position: | chr16:9417875-9417462 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 226, 47 |
| Conread position: | 106-465 |
| Cow position: | chr16:44972729-44973084 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 116, 34 |
| Conread position: | 133-465 |
| Cow position: | chr16:684617-684944 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 198, 17 |
| Conread position: | 140-529 |
| Cow position: | chr16:21341305-21340921 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 271 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 194, 61 |
| Conread position: | 146-540 |
| Cow position: | chr16:8661899-8662277 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 296, 38 |
| Conread position: | 170-515 |
| Cow position: | chr16:15369947-15369604 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 161, 87 |
| Conread position: | 173-499 |
| Cow position: | chr16:17125324-17125002 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 165, 14 |
| Conread position: | 174-519 |
| Cow position: | chr16:41834817-41834473 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 166, 87 |
| Conread position: | 179-524 |
| Cow position: | chr16:44704558-44704220 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 238 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 152, 22 |
| Conread position: | 180-494 |
| Cow position: | chr16:16958084-16958390 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 223 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 158, 48 |
| Conread position: | 182-465 |
| Cow position: | chr16:23403757-23403477 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 149, 80 |
| Conread position: | 182-495 |
| Cow position: | chr16:19797748-19798062 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 116, 37 |
| Conread position: | 182-499 |
| Cow position: | chr16:23892384-23892690 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 60, 51 |
| Conread position: | 191-529 |
| Cow position: | chr16:36578029-36578362 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 51, 68 |
| Conread position: | 193-465 |
| Cow position: | chr16:5844848-5844570 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 138, 67 |
| Conread position: | 203-519 |
| Cow position: | chr16:40879515-40879202 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 131, 59 |
| Conread position: | 204-566 |
| Cow position: | chr16:23029250-23028888 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 94, 54 |
| Conread position: | 213-519 |
| Cow position: | chr16:28267805-28268106 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 118, 44 |
| Conread position: | 225-519 |
| Cow position: | chr16:7541378-7541090 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 106, 13 |
| Conread position: | 228-520 |
| Cow position: | chr16:22386309-22386021 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 211, 37 |
| Conread position: | 228-546 |
| Cow position: | chr16:20667371-20667063 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 103, 29 |
| Conread position: | 262-529 |
| Cow position: | chr16:37083057-37083312 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 172, 52 |
Show alignments to all cow chromosomes.