Cow genome map

Conread name: unkn-MI-P-NA-afq-h-05-1-UM.s1

Conread position: 14-530
Cow position: chr17:2179496-2179006 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 342
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 38, 21

Conread position: 17-545
Cow position: chr17:16217093-16216580 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 339
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 35, 52

Conread position: 18-178
Cow position: chr17:29810265-29810109 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 154, 17

Conread position: 18-211
Cow position: chr17:40879434-40879242 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 33, 47

Conread position: 18-252
Cow position: chr17:37018993-37018763 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 163
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 33, 17

Conread position: 18-277
Cow position: chr17:32651230-32650975 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 180
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 12

Conread position: 18-289
Cow position: chr17:40802425-40802164 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 185
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 32, 47

Conread position: 18-423
Cow position: chr17:7802197-7802588 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-458
Cow position: chr17:20078017-20078445 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 299
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 33, 17

Conread position: 18-465
Cow position: chr17:2079299-2078862 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 305
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 34, 17

Conread position: 18-466
Cow position: chr17:3306248-3305810 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 17

Conread position: 18-489
Cow position: chr17:27791131-27791589 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 18-499
Cow position: chr17:35547677-35548134 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-519
Cow position: chr17:5638228-5638718 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 26

Conread position: 18-519
Cow position: chr17:15722246-15721768 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 342
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 32, 17

Conread position: 18-523
Cow position: chr17:22563803-22563310 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 18-523
Cow position: chr17:23337401-23337882 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 333
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 34, 17

Conread position: 18-530
Cow position: chr17:16416428-16416921 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 347
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 34, 17

Conread position: 18-534
Cow position: chr17:10445817-10445319 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 19-449
Cow position: chr17:31780814-31781224 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 16

Conread position: 19-452
Cow position: chr17:2081612-2081190 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 16

Conread position: 19-452
Cow position: chr17:34565009-34564583 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 16

Conread position: 19-519
Cow position: chr17:16505083-16505577 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 16

Conread position: 19-519
Cow position: chr17:22773793-22774293 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 49

Conread position: 20-304
Cow position: chr17:21646194-21646469 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 194
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 30, 45

Conread position: 20-465
Cow position: chr17:144554-144983 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 306
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 30, 14

Conread position: 20-514
Cow position: chr17:1568558-1569045 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 15

Conread position: 20-519
Cow position: chr17:979523-980015 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 330
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 30, 47

Conread position: 25-451
Cow position: chr17:38788636-38789064 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 38

Conread position: 25-451
Cow position: chr17:38799878-38800306 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 38

Conread position: 25-537
Cow position: chr17:42662927-42663414 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 10

Conread position: 27-465
Cow position: chr17:4298781-4298361 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 309
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 23, 42

Conread position: 27-513
Cow position: chr17:20093513-20093984 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 318
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 25, 42

Conread position: 27-519
Cow position: chr17:18264824-18265304 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 322
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 25, 40

Conread position: 29-530
Cow position: chr17:35619859-35620343 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 328
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 21, 36

Conread position: 30-429
Cow position: chr17:14304100-14304481 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 35

Conread position: 30-461
Cow position: chr17:6082149-6081716 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 295
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 22, 37

Conread position: 30-465
Cow position: chr17:923274-922845 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 38

Conread position: 32-215
Cow position: chr17:42284201-42284381 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 19, 33

Conread position: 32-227
Cow position: chr17:35998518-35998706 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 123, 0

Conread position: 32-447
Cow position: chr17:32456799-32457218 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 288
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 18, 35

Conread position: 32-513
Cow position: chr17:43227977-43227508 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 33-463
Cow position: chr17:39612201-39611789 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 285
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 19, 36

Conread position: 33-530
Cow position: chr17:21860167-21860653 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 34

Conread position: 39-465
Cow position: chr17:39748285-39747871 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 11

Conread position: 41-481
Cow position: chr17:6872577-6872992 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 298
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 9, 23

Conread position: 51-465
Cow position: chr17:6263485-6263078 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 271
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 280, 15

Conread position: 64-514
Cow position: chr17:16869687-16870120 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 302
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 108, 27

Conread position: 69-443
Cow position: chr17:24031411-24031047 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 244
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 262, 71

Conread position: 72-430
Cow position: chr17:30281676-30282010 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 237
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 78, 0

Conread position: 85-524
Cow position: chr17:9753370-9752955 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 288
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 279, 71

Conread position: 91-524
Cow position: chr17:692028-692458 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 292
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 37, 7

Conread position: 92-530
Cow position: chr17:35018919-35018505 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 286
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 238, 51

Conread position: 98-443
Cow position: chr17:14006993-14006660 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 222
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 130, 42

Conread position: 122-519
Cow position: chr17:5671959-5672346 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 262
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 258, 18

Conread position: 143-489
Cow position: chr17:2244530-2244873 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 231
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 188, 119

Conread position: 160-495
Cow position: chr17:29823074-29822742 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 217
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 173, 100

Conread position: 160-535
Cow position: chr17:40416115-40416488 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 253
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 20, 8

Conread position: 166-487
Cow position: chr17:8008101-8007790 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 227
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 165, 91

Conread position: 166-519
Cow position: chr17:24785709-24785360 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 231
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 167, 7

Conread position: 168-465
Cow position: chr17:27052930-27052631 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 199
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 82, 187

Conread position: 173-514
Cow position: chr17:11775925-11775594 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 228
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 67, 52

Conread position: 183-519
Cow position: chr17:18785909-18785590 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 222
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 21

Conread position: 251-522
Cow position: chr17:37701385-37701117 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 178
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 188, 128

Conread position: 274-499
Cow position: chr17:43443075-43443300 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 156
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 57, 79

Conread position: 285-555
Cow position: chr17:23041977-23041715 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 176
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 390-529
Cow position: chr17:30145892-30146032 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 103
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 55, 0

Show alignments to all cow chromosomes.